Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FVA70_RS02420 Genome accession   NZ_CP042860
Coordinates   579293..579814 (+) Length   173 a.a.
NCBI ID   WP_109912589.1    Uniprot ID   -
Organism   Providencia sp. 1701091     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 574293..584814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVA70_RS02410 (FVA70_02395) - 574464..575660 (+) 1197 WP_115166560.1 amino acid aminotransferase -
  FVA70_RS02415 (FVA70_02400) uvrA 575740..578574 (-) 2835 WP_109912590.1 excinuclease ABC subunit UvrA -
  FVA70_RS02420 (FVA70_02405) ssb 579293..579814 (+) 522 WP_109912589.1 single-stranded DNA-binding protein Machinery gene
  FVA70_RS02425 (FVA70_02410) - 580089..580496 (-) 408 WP_117163030.1 helix-turn-helix domain-containing protein -
  FVA70_RS02430 (FVA70_02415) - 580736..581908 (-) 1173 WP_164528353.1 MFS transporter -
  FVA70_RS02435 (FVA70_02420) ivbL 582242..582331 (+) 90 WP_109912586.1 ilvB operon leader peptide IvbL -
  FVA70_RS02440 (FVA70_02425) ilvB 582435..584132 (+) 1698 WP_109912585.1 acetolactate synthase large subunit -
  FVA70_RS02445 (FVA70_02430) ilvN 584135..584419 (+) 285 WP_004914949.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18561.60 Da        Isoelectric Point: 4.9468

>NTDB_id=379064 FVA70_RS02420 WP_109912589.1 579293..579814(+) (ssb) [Providencia sp. 1701091]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQGGQGGWGQPQQPQAAQQFSGGGAPAARPSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=379064 FVA70_RS02420 WP_109912589.1 579293..579814(+) (ssb) [Providencia sp. 1701091]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGAGTCGTTATTTTCGGCAAACTTGCTGAGGTAGCAGGTGAATACCTAAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGTTATACGACAGAAGTTGTTGTGAATATCGG
TGGCTCAATGCAAATGTTAGGTGGCCGTGGCGGTGATGCACCATCACAAGGTCAAGGCGGTCAAGGTGGTTGGGGCCAAC
CACAGCAGCCTCAAGCGGCACAACAATTCAGTGGTGGTGGAGCGCCAGCCGCACGCCCATCAGCACCTGCACCACAAACC
AATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.613
  ssb Neisseria meningitidis MC58

46.927

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.474

Multiple sequence alignment