Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HB730_RS03945 Genome accession   NZ_CP050332
Coordinates   825899..826396 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain DVT413     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 820899..831396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB730_RS03930 (HB730_03950) bfr 820907..821371 (+) 465 WP_003093668.1 bacterioferritin -
  HB730_RS03935 (HB730_03955) uvrA 821443..824280 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  HB730_RS03940 (HB730_03960) - 824494..825882 (+) 1389 WP_009316331.1 MFS transporter -
  HB730_RS03945 (HB730_03965) ssb 825899..826396 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  HB730_RS03950 (HB730_03970) pchA 826485..827915 (-) 1431 WP_003129314.1 isochorismate synthase PchA -
  HB730_RS03955 (HB730_03975) pchB 827912..828217 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  HB730_RS03960 (HB730_03980) pchC 828217..828972 (-) 756 WP_019486336.1 pyochelin biosynthesis editing thioesterase PchC -
  HB730_RS03965 (HB730_03985) pchD 828969..830612 (-) 1644 WP_003106954.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=379048 HB730_RS03945 WP_003114685.1 825899..826396(+) (ssb) [Pseudomonas aeruginosa strain DVT413]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=379048 HB730_RS03945 WP_003114685.1 825899..826396(+) (ssb) [Pseudomonas aeruginosa strain DVT413]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGATTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515

Multiple sequence alignment