Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FTO60_RS07165 Genome accession   NZ_CP042819
Coordinates   1446595..1447083 (-) Length   162 a.a.
NCBI ID   WP_148055314.1    Uniprot ID   -
Organism   Octadecabacter sp. SW4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1441595..1452083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTO60_RS07135 (FTO60_07135) - 1441615..1442555 (-) 941 Protein_1425 site-specific tyrosine recombinase XerD -
  FTO60_RS07140 (FTO60_07140) - 1442552..1444105 (-) 1554 WP_148055309.1 hypothetical protein -
  FTO60_RS17645 - 1444108..1444260 (-) 153 WP_172623831.1 hypothetical protein -
  FTO60_RS07145 (FTO60_07145) - 1444447..1445010 (+) 564 WP_148055310.1 shikimate kinase -
  FTO60_RS07150 (FTO60_07150) aroB 1445007..1446131 (+) 1125 WP_148055311.1 3-dehydroquinate synthase -
  FTO60_RS07155 (FTO60_07155) - 1446150..1446365 (-) 216 WP_148055312.1 N-acetyltransferase -
  FTO60_RS07160 (FTO60_07160) - 1446384..1446611 (-) 228 WP_148055313.1 hypothetical protein -
  FTO60_RS07165 (FTO60_07165) ssb 1446595..1447083 (-) 489 WP_148055314.1 single-stranded DNA-binding protein Machinery gene
  FTO60_RS07170 (FTO60_07170) - 1447268..1447867 (+) 600 WP_148055315.1 lytic transglycosylase domain-containing protein -
  FTO60_RS07175 (FTO60_07175) - 1447867..1448268 (+) 402 WP_148055316.1 hypothetical protein -
  FTO60_RS07180 (FTO60_07180) - 1448350..1450434 (-) 2085 WP_148055317.1 ABC transporter ATP-binding protein -
  FTO60_RS07185 (FTO60_07185) - 1450439..1451890 (-) 1452 WP_148055318.1 ABC transporter permease -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17124.81 Da        Isoelectric Point: 5.0099

>NTDB_id=378755 FTO60_RS07165 WP_148055314.1 1446595..1447083(-) (ssb) [Octadecabacter sp. SW4]
MAGSVNKVILIGNLGRDPEVRTFQNGGKVCNLRIATSETWKDKNTGERREKTEWHSVAIFQEGLVRIAEQYLKKGSKVYI
EGKLQTRKYQDQSGADRYSTEVVLQGFDGTLTMLDGRSEGGGGGGYMADQSGGGSGGGGSSSGGGYDSGPSGGGDMDDEI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=378755 FTO60_RS07165 WP_148055314.1 1446595..1447083(-) (ssb) [Octadecabacter sp. SW4]
ATGGCCGGATCAGTCAACAAAGTCATTCTTATCGGCAATCTGGGGCGCGACCCCGAAGTGCGGACATTCCAGAACGGTGG
CAAGGTATGCAATCTGCGCATCGCCACCTCCGAGACATGGAAAGACAAGAACACCGGCGAGCGGCGCGAGAAGACTGAAT
GGCATTCCGTCGCTATTTTTCAGGAAGGGCTGGTGCGCATCGCCGAGCAATACCTGAAGAAAGGCTCCAAGGTTTACATC
GAAGGCAAGCTGCAAACCCGCAAGTATCAGGACCAGTCCGGTGCTGATCGCTACAGCACCGAGGTGGTCTTGCAGGGCTT
TGACGGCACGTTGACGATGCTGGATGGGCGCAGCGAGGGCGGCGGCGGTGGCGGCTATATGGCCGATCAATCGGGCGGCG
GCTCTGGCGGCGGCGGATCGTCCTCGGGCGGCGGCTATGACAGTGGCCCATCCGGTGGCGGCGACATGGACGATGAAATC
CCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.705

100

0.562
  ssb Glaesserella parasuis strain SC1401

54.362

91.975

0.5
  ssb Neisseria meningitidis MC58

42.458

100

0.469
  ssb Neisseria gonorrhoeae MS11

42.458

100

0.469

Multiple sequence alignment