Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSYTB_RS08965 Genome accession   NZ_CP042804
Coordinates   1827992..1830208 (+) Length   738 a.a.
NCBI ID   WP_010202203.1    Uniprot ID   -
Organism   Pseudomonas amygdali pv. tabaci str. ATCC 11528     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1822992..1835208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYTB_RS08950 (PSYTB_08955) - 1825331..1825954 (+) 624 WP_010202220.1 glutathione S-transferase -
  PSYTB_RS08955 (PSYTB_08960) - 1826138..1827070 (+) 933 WP_010202219.1 ABC transporter ATP-binding protein -
  PSYTB_RS08960 (PSYTB_08965) - 1827067..1827855 (+) 789 WP_002552673.1 ABC transporter permease -
  PSYTB_RS08965 (PSYTB_08970) comA 1827992..1830208 (+) 2217 WP_010202203.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSYTB_RS08970 (PSYTB_08975) exbB 1830290..1830967 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSYTB_RS08975 (PSYTB_08980) - 1830964..1831395 (+) 432 WP_002552677.1 biopolymer transporter ExbD -
  PSYTB_RS08980 (PSYTB_08985) lpxK 1831395..1832390 (+) 996 WP_005782194.1 tetraacyldisaccharide 4'-kinase -
  PSYTB_RS08985 (PSYTB_08990) - 1832408..1832593 (+) 186 WP_002552679.1 Trm112 family protein -
  PSYTB_RS08990 (PSYTB_08995) kdsB 1832590..1833354 (+) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSYTB_RS08995 (PSYTB_09000) murB 1833389..1834408 (+) 1020 WP_010202202.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80429.75 Da        Isoelectric Point: 9.9505

>NTDB_id=378659 PSYTB_RS08965 WP_010202203.1 1827992..1830208(+) (comA) [Pseudomonas amygdali pv. tabaci str. ATCC 11528]
MRTGMIALASGLVALRFLPALPPTWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLVHRLDGQTLWLQG
KVVGLPSVAEGVVRFELEGARSRRAILPARIRVAWYGGPQVNSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLTPARGALRDLIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPWACALAFIAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILVLIFSGRLGAWNWWQSWTRAQWLIAIGLLPVLLALNLPISLSGPFANLLAVPWVSLIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALEWLFMFLGWVAAVLPAWLPSAMPGWAWLLSLLGAFILLLPKGVPMRPLGWPLLLLCV
FPPLDSVPAGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHADSDHAGGA
AAVHQAFPVDRVLGGELARLAPQLDARLCESDARWEWDGVVFSTWRWEQGPDGNPASCMLSVDAGGERLLLTGDIDVDAE
RAAIASGFDLRAHWLQSPHHGSRTSSSKVFLQAVGAVGVLISRGRNNAFGHPHPLVMARYRWLGMASYDSAELGAVSLRL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=378659 PSYTB_RS08965 WP_010202203.1 1827992..1830208(+) (comA) [Pseudomonas amygdali pv. tabaci str. ATCC 11528]
ATGCGCACAGGGATGATCGCGCTCGCGTCGGGGCTTGTGGCCTTACGCTTTCTGCCTGCTTTGCCGCCGACCTGGCTGTT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTACCGTTTCGTACCTATCCACTGGCGCTGTTCCTGCTCGGTTTTACCT
GGGCGTGTGTTTCTGCGCAGTGGGCGTTGAATGACCGTCTGGTTCATCGTCTGGACGGTCAGACGCTGTGGCTGCAAGGC
AAGGTGGTCGGTTTGCCCAGTGTCGCCGAGGGCGTGGTGCGTTTCGAACTGGAGGGGGCAAGGTCGCGCAGGGCGATATT
GCCTGCACGCATCCGGGTGGCGTGGTACGGCGGTCCGCAGGTCAACAGCGGTGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCTGATGCTTTTGATTACGAAGCCTGGCTGTTGGCGCAGCGCATCGGTGCCACCGGT
ACGGTGGTGGATGGTCAACTGCTGACACCTGCGCGCGGGGCGTTGCGCGACCTTATTCGTCAGCGCTTGCTGGCGGTCGA
TGCGCAGGGCAGAGAGGGCGGCTTGGCGGCGCTGGTGTTGGGCGATGGCTCCGGATTGTCGAGCACCGATTGGCAGGTGC
TGCAGGACACCGGCACGGTGCATTTGCTGGTGATTTCCGGCCAGCATATCGGTTTGCTGGCCGGGGTGATTTACGCGCTG
GTCGCAGGCCTTGCACGCTGGGGGCTGTGGCCACGGGCTTTGCCCTGGCTGCCTTGGGCCTGTGCGCTGGCGTTCATCGC
TGCGCTGGGTTACGGGCTGCTGGCCGGTTTCGAGGTGCCGGTACGGCGTGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGTTTGCGCTTTCGGCACCTGGGCGTTGTCTGGCCGTTGTTACTGTCATTCAACGCGGTGCTGATTTTCGAGCCGCTG
GTGACACTGCAGCCGGGGTTCTGGCTGTCTTTCGCGGCGGTTGGCATTCTGGTGCTGATTTTCAGTGGACGTCTCGGTGC
CTGGAATTGGTGGCAAAGCTGGACGCGTGCGCAGTGGCTGATCGCAATTGGCTTGCTGCCTGTTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGTCCGTTTGCCAATTTGCTGGCTGTGCCTTGGGTCAGCTTGATCGTCCTGCCGCCTGCGTTG
CTTGGAACACTGCTGCTGCCGGTGCCTGTTGTGGGCGAAGGCTTGCTCTGGCTGGCCGGAGGAGCGCTGGAGTGGCTGTT
TATGTTTCTCGGCTGGGTTGCCGCAGTCTTGCCCGCCTGGTTGCCCAGTGCAATGCCGGGCTGGGCGTGGCTGCTTAGTC
TGCTCGGGGCCTTCATTTTATTACTGCCCAAAGGCGTGCCGATGCGTCCGCTGGGTTGGCCATTGCTGTTGTTGTGCGTT
TTTCCGCCGCTCGACTCAGTGCCTGCAGGCCAGGTAGAAGTATTGCAGCTGGACGTGGGGCAGGGCCTGGCCATTCTCCT
GCGCACTCGAAATCACACGCTCTTGTACGACGCAGGTCCACGTTTCGGCGAGTTCGATATCGGTCAGCGTGTGGTCGTGC
CCGCCATGCGCAAGGCCGGTGTGCGTCATCTGGACCTGATGTTGATCAGTCACGCCGACTCCGATCATGCCGGGGGCGCA
GCGGCGGTTCATCAGGCATTTCCGGTTGACCGTGTACTGGGCGGTGAGCTGGCCAGGCTCGCGCCGCAACTCGACGCGCG
CTTGTGTGAGAGCGATGCGCGCTGGGAGTGGGATGGGGTGGTGTTCTCCACCTGGCGCTGGGAGCAGGGCCCTGATGGCA
ATCCGGCATCCTGCATGTTGAGTGTCGACGCCGGGGGCGAGCGTCTGCTGCTGACGGGTGATATCGACGTCGACGCGGAA
CGTGCGGCAATCGCCAGCGGTTTCGACCTTCGTGCCCATTGGTTGCAGTCCCCGCATCACGGCAGCCGGACCTCGTCATC
CAAAGTATTTCTTCAGGCCGTCGGAGCGGTTGGCGTGCTGATCTCCCGTGGCCGTAACAACGCCTTCGGCCACCCGCATC
CGTTGGTCATGGCGCGTTATCGATGGCTGGGTATGGCCAGTTATGACAGCGCTGAGCTGGGCGCTGTCAGTCTGCGGCTG
GGTACGTTCGGCACGCCGCAGGCAGAGCGCGCGCAACGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.064

97.154

0.603
  comA Ralstonia pseudosolanacearum GMI1000

32.904

100

0.381

Multiple sequence alignment