Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSYTB_RS08970 Genome accession   NZ_CP042804
Coordinates   1830290..1830967 (+) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas amygdali pv. tabaci str. ATCC 11528     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1825290..1835967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYTB_RS08950 (PSYTB_08955) - 1825331..1825954 (+) 624 WP_010202220.1 glutathione S-transferase -
  PSYTB_RS08955 (PSYTB_08960) - 1826138..1827070 (+) 933 WP_010202219.1 ABC transporter ATP-binding protein -
  PSYTB_RS08960 (PSYTB_08965) - 1827067..1827855 (+) 789 WP_002552673.1 ABC transporter permease -
  PSYTB_RS08965 (PSYTB_08970) comA 1827992..1830208 (+) 2217 WP_010202203.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSYTB_RS08970 (PSYTB_08975) exbB 1830290..1830967 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSYTB_RS08975 (PSYTB_08980) - 1830964..1831395 (+) 432 WP_002552677.1 biopolymer transporter ExbD -
  PSYTB_RS08980 (PSYTB_08985) lpxK 1831395..1832390 (+) 996 WP_005782194.1 tetraacyldisaccharide 4'-kinase -
  PSYTB_RS08985 (PSYTB_08990) - 1832408..1832593 (+) 186 WP_002552679.1 Trm112 family protein -
  PSYTB_RS08990 (PSYTB_08995) kdsB 1832590..1833354 (+) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSYTB_RS08995 (PSYTB_09000) murB 1833389..1834408 (+) 1020 WP_010202202.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=378660 PSYTB_RS08970 WP_002552676.1 1830290..1830967(+) (exbB) [Pseudomonas amygdali pv. tabaci str. ATCC 11528]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=378660 PSYTB_RS08970 WP_002552676.1 1830290..1830967(+) (exbB) [Pseudomonas amygdali pv. tabaci str. ATCC 11528]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGACTCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCG
GCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTACTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCG
TCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTTCTGCAAAGTCGCGTCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment