Detailed information NTG0378645

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: PSYTB_RS01865
• Genome accession: NZ_CP042804
• Coordinates: 367272..368336 (+)
• Length: 354 a.a.
• NCBI ID: WP_002551652.1
• Uniprot ID: A0A7Z6Y2Y4
• Organism: Pseudomonas amygdali pv. tabaci str. ATCC 11528
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 362272..373336

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSYTB_RS01830 (PSYTB_01830)	-	362434..363702 (+)	1269	WP_002551650.1	malic enzyme-like NAD(P)-binding protein	-
PSYTB_RS01860 (PSYTB_01860)	-	364621..367062 (-)	2442	WP_373561872.1	penicillin-binding protein 1A	-
PSYTB_RS01865 (PSYTB_01865)	pilM	367272..368336 (+)	1065	WP_002551652.1	pilus assembly protein PilM	Machinery gene
PSYTB_RS01870 (PSYTB_01870)	-	368336..368935 (+)	600	WP_004654254.1	PilN domain-containing protein	-
PSYTB_RS01875 (PSYTB_01875)	pilO	368932..369555 (+)	624	WP_002551654.1	type 4a pilus biogenesis protein PilO	-
PSYTB_RS01880 (PSYTB_01880)	pilP	369552..370079 (+)	528	WP_002551655.1	type 4a pilus biogenesis lipoprotein PilP	-
PSYTB_RS01885 (PSYTB_01885)	pilQ	370127..372232 (+)	2106	WP_005743117.1	type IV pilus secretin PilQ	Machinery gene
PSYTB_RS01890 (PSYTB_01890)	aroK	372237..372755 (+)	519	WP_002551657.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 38078.57 Da
• Isoelectric Point: 4.7008

>NTDB_id=378645 PSYTB_RS01865 WP_002551652.1 367272..368336(+) (pilM) [Pseudomonas amygdali pv. tabaci str. ATCC 11528]
MFELFSKKANTLLGIDISSTSVKLLELSRSGTRYKVESYAVEPLPANAVVEKNIAELEGVGQALSRVLAKAKTSVKIVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKLEADQYIPYPLEEVAIDFEVQGYSVRNPERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLAAQLGNGHDELTVAVVDIGATMTTLSVLHHGRIIYTREQLFGGRQLTDEIQRRYGLSM
EEAGLAKKQGGLPDDYVSEVLDPFKDALVQQVSRSLQFFFAAGQYNSVDHIMLAGGTASISGLEHLIQRRIGTPTMVANP
FADMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=378645 PSYTB_RS01865 WP_002551652.1 367272..368336(+) (pilM) [Pseudomonas amygdali pv. tabaci str. ATCC 11528]
GTGTTCGAACTCTTCAGTAAGAAGGCCAACACCCTTCTAGGGATCGATATTAGCTCCACCTCGGTAAAACTCCTGGAATT
GAGTCGTTCCGGCACTCGTTACAAGGTCGAGTCTTACGCAGTCGAGCCGTTGCCGGCCAACGCTGTCGTCGAAAAGAATA
TTGCCGAGCTCGAAGGGGTTGGTCAGGCGCTGTCTCGCGTGCTCGCCAAGGCCAAGACCAGCGTCAAGATCGTGGCGGTC
GCCGTAGCCGGTTCCGCCGTGATCACCAAGACGATTGAAATGGACGCCGGTCTTTCCGACGACGACATGGAAAACCAGCT
CAAGCTTGAGGCTGACCAGTACATCCCTTATCCGCTGGAAGAAGTCGCCATCGATTTCGAAGTGCAGGGCTACTCGGTGC
GCAATCCCGAACGCGTCGAAGTATTGCTGGCTGCCTGCCGCAAAGAGAACGTCGAAGTGCGTGAGGCGGCGCTGGCTCTG
GCCGGGCTGACTGCGCGCGTGGTGGACGTCGAGGCCTATGCCCTGGAGCGCTCGTTCGGCCTGCTGGCTGCGCAACTGGG
TAACGGTCATGACGAGCTTACCGTGGCGGTGGTCGATATCGGTGCCACCATGACCACCCTCAGCGTGCTGCATCATGGCC
GGATCATCTATACCCGCGAGCAACTGTTTGGTGGCCGCCAGCTGACTGACGAAATCCAGCGCCGCTATGGGCTTTCCATG
GAGGAGGCCGGGCTTGCCAAGAAGCAGGGCGGGTTGCCCGACGACTATGTCAGCGAGGTGCTGGACCCCTTCAAGGATGC
GTTGGTGCAGCAGGTCTCCCGTTCTTTGCAGTTCTTCTTTGCGGCCGGTCAATACAACTCCGTGGATCACATCATGCTGG
CAGGCGGCACGGCTTCGATTTCAGGGCTGGAGCATTTGATTCAACGACGCATTGGCACCCCGACGATGGTCGCCAACCCG
TTTGCCGACATGGCCCTGAGCTCCAAGGTCAATGCCGGGGCGCTGGCCAGTGACGCTCCCGCGTTGATGATCGCGTGCGG
TCTGGCGTTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

3D structure

• AlphaFold DB: A0A7Z6Y2Y4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Acinetobacter baumannii D1279779	56.215	100	0.562
comM	Acinetobacter nosocomialis M2	56.215	100	0.562
comM	Acinetobacter baylyi ADP1	53.672	100	0.537
pilM	Legionella pneumophila strain ERS1305867	46.761	100	0.469