Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FSZ17_RS23135 Genome accession   NZ_CP042593
Coordinates   4895549..4896052 (-) Length   167 a.a.
NCBI ID   WP_057772417.1    Uniprot ID   A0A5B8Z9W3
Organism   Cytobacillus dafuensis strain FJAT-25496     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4890549..4901052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSZ17_RS23120 (FSZ17_23115) - 4891770..4892711 (-) 942 WP_057772419.1 YybS family protein -
  FSZ17_RS23125 (FSZ17_23120) - 4892845..4894842 (-) 1998 WP_057772418.1 methyl-accepting chemotaxis protein -
  FSZ17_RS23130 (FSZ17_23125) rpsR 4895259..4895495 (-) 237 WP_057773170.1 30S ribosomal protein S18 -
  FSZ17_RS23135 (FSZ17_23130) ssbA 4895549..4896052 (-) 504 WP_057772417.1 single-stranded DNA-binding protein Machinery gene
  FSZ17_RS23140 (FSZ17_23135) rpsF 4896165..4896452 (-) 288 WP_057772416.1 30S ribosomal protein S6 -
  FSZ17_RS23145 (FSZ17_23140) - 4896662..4896838 (-) 177 WP_082625259.1 twin-arginine translocase TatA/TatE family subunit -
  FSZ17_RS23150 (FSZ17_23145) - 4896848..4898488 (-) 1641 WP_057772414.1 PhoX family phosphatase -
  FSZ17_RS23155 (FSZ17_23150) - 4898684..4899574 (-) 891 WP_228460261.1 ABC transporter permease -
  FSZ17_RS23160 (FSZ17_23155) - 4899585..4900508 (-) 924 WP_057772410.1 ABC transporter permease -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18622.45 Da        Isoelectric Point: 4.7920

>NTDB_id=378612 FSZ17_RS23135 WP_057772417.1 4895549..4896052(-) (ssbA) [Cytobacillus dafuensis strain FJAT-25496]
MMNRVVLVGRLTKDPDLRYTPNGVAVASFTLAVNRTFTNQQGEREADFINCVVWRKAAENVANFLKKGSLAGVDGRIQTR
SFEGQDGKRVYITEVMAESVQFLEPRNSARAEGGNFGAPRDQDFPFGNNNNQNQQNNRNNQGYTRVDNDPFANDGGQIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=378612 FSZ17_RS23135 WP_057772417.1 4895549..4896052(-) (ssbA) [Cytobacillus dafuensis strain FJAT-25496]
ATGATGAACCGCGTTGTTCTTGTCGGACGTTTGACAAAGGATCCTGATCTACGATACACACCAAATGGAGTAGCGGTTGC
TTCATTCACTCTTGCTGTTAATCGTACATTTACGAACCAACAGGGTGAACGAGAAGCTGATTTTATTAACTGTGTTGTTT
GGAGAAAGGCAGCTGAAAATGTAGCGAACTTCTTAAAGAAGGGAAGCCTTGCAGGTGTTGATGGAAGAATTCAAACTCGC
AGCTTTGAAGGTCAGGATGGAAAACGTGTATATATAACAGAGGTTATGGCTGAAAGTGTTCAATTCCTCGAGCCGCGTAA
TAGCGCTCGAGCAGAAGGTGGAAATTTCGGTGCACCTAGAGATCAGGATTTCCCATTTGGAAATAACAATAATCAGAATC
AACAAAATAACAGAAATAATCAAGGGTATACACGTGTAGATAACGATCCATTTGCAAATGACGGTGGCCAAATCGACATT
TCAGATGATGATCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8Z9W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.707
  ssb Latilactobacillus sakei subsp. sakei 23K

54.749

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.261

66.467

0.407
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.371

Multiple sequence alignment