Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HB742_RS03585 Genome accession   NZ_CP050324
Coordinates   745527..746024 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain DVT427     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 740527..751024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB742_RS03570 (HB742_03575) bfr 740536..741000 (+) 465 WP_033875787.1 bacterioferritin -
  HB742_RS03575 (HB742_03580) uvrA 741071..743908 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  HB742_RS03580 (HB742_03585) - 744122..745510 (+) 1389 WP_003103910.1 MFS transporter -
  HB742_RS03585 (HB742_03590) ssb 745527..746024 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  HB742_RS29820 - 746166..746768 (+) 603 WP_368041988.1 hypothetical protein -
  HB742_RS29825 - 746769..747383 (+) 615 WP_368041989.1 site-specific integrase -
  HB742_RS03595 (HB742_03600) - 747376..748889 (+) 1514 Protein_708 site-specific integrase -
  HB742_RS03600 (HB742_03605) - 748882..750873 (+) 1992 WP_033877390.1 integrase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=378337 HB742_RS03585 WP_003114685.1 745527..746024(+) (ssb) [Pseudomonas aeruginosa strain DVT427]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=378337 HB742_RS03585 WP_003114685.1 745527..746024(+) (ssb) [Pseudomonas aeruginosa strain DVT427]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515