Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   HB750_RS06785 Genome accession   NZ_CP050273
Coordinates   1383550..1384206 (+) Length   218 a.a.
NCBI ID   WP_002266318.1    Uniprot ID   Q9KWH4
Organism   Streptococcus mutans strain P1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1378550..1389206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB750_RS06755 (HB750_06755) - 1378784..1379038 (-) 255 WP_002262064.1 DUF3165 family protein -
  HB750_RS06760 (HB750_06760) typA 1379067..1380911 (-) 1845 WP_002262063.1 translational GTPase TypA -
  HB750_RS06765 (HB750_06765) - 1381145..1381534 (-) 390 WP_002269630.1 rhodanese-like domain-containing protein -
  HB750_RS06770 (HB750_06770) - 1381544..1382515 (-) 972 WP_002262061.1 ROK family glucokinase -
  HB750_RS06775 (HB750_06775) - 1382508..1382714 (-) 207 WP_002262060.1 YqgQ family protein -
  HB750_RS06780 (HB750_06780) dpr 1382922..1383449 (-) 528 WP_002266317.1 DNA starvation/stationary phase protection protein -
  HB750_RS06785 (HB750_06785) cclA/cilC 1383550..1384206 (+) 657 WP_002266318.1 prepilin peptidase Machinery gene
  HB750_RS06790 (HB750_06790) trpA 1384443..1385225 (-) 783 WP_002264437.1 tryptophan synthase subunit alpha -
  HB750_RS06795 (HB750_06795) trpB 1385229..1386440 (-) 1212 WP_002262056.1 tryptophan synthase subunit beta -
  HB750_RS06800 (HB750_06800) - 1386437..1387018 (-) 582 WP_002262055.1 phosphoribosylanthranilate isomerase -
  HB750_RS06805 (HB750_06805) trpC 1387005..1387772 (-) 768 WP_002280743.1 indole-3-glycerol phosphate synthase TrpC -
  HB750_RS06810 (HB750_06810) trpD 1387765..1388772 (-) 1008 WP_002280744.1 anthranilate phosphoribosyltransferase -

Sequence


Protein


Download         Length: 218 a.a.        Molecular weight: 24893.10 Da        Isoelectric Point: 8.5763

>NTDB_id=378017 HB750_RS06785 WP_002266318.1 1383550..1384206(+) (cclA/cilC) [Streptococcus mutans strain P1]
MKLILFFMLGASLGSFFGLVVDRYPQKSIIFPRSHCNKCYNCLTMRDLIPIFSRIINKNSCRFCGYPIPLRYSLVELLCG
LISTGFALDLLTTSQVCLLFMGVLLSLYDLQDQSYPLTLWIGFTFLLMFIYPLNLISLILFLFGIFAALKNINIGSGDFF
YLATLALSLNLQQIIWIIQIASLLGILYSLLFQKHKEPFAFVPFLFLGHLIIIFSHLI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=378017 HB750_RS06785 WP_002266318.1 1383550..1384206(+) (cclA/cilC) [Streptococcus mutans strain P1]
ATGAAACTTATTTTATTTTTTATGTTGGGAGCTTCTCTTGGCTCTTTCTTTGGCTTAGTTGTTGATCGTTACCCTCAGAA
ATCTATTATATTTCCTAGAAGCCATTGCAATAAGTGTTATAACTGCTTAACCATGAGGGATCTTATCCCAATATTTTCAC
GAATCATCAACAAAAATTCTTGTCGCTTTTGCGGTTACCCTATTCCATTGCGTTATTCCTTGGTAGAATTACTCTGCGGA
CTGATTAGCACAGGTTTTGCTCTTGATTTATTAACCACTTCACAAGTATGTTTGCTCTTCATGGGAGTTCTTTTATCTCT
TTATGATTTACAAGATCAGTCTTATCCTTTGACACTGTGGATAGGCTTTACTTTTCTCTTAATGTTTATCTATCCTCTTA
ACCTAATTAGCTTAATTCTTTTTCTATTTGGTATTTTTGCTGCCCTCAAAAATATTAATATCGGAAGCGGTGATTTCTTC
TATCTGGCTACTTTGGCACTTTCTCTTAATCTTCAGCAAATTATTTGGATTATTCAGATTGCCAGTTTATTAGGAATTCT
TTACAGCCTGCTTTTTCAAAAGCACAAAGAACCTTTTGCTTTTGTTCCTTTCTTATTCTTGGGTCACCTCATTATCATTT
TCTCTCACTTGATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q9KWH4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

42.791

98.624

0.422

  cclA/cilC Streptococcus pneumoniae Rx1

42.254

97.706

0.413

  cclA/cilC Streptococcus pneumoniae D39

42.254

97.706

0.413

  cclA/cilC Streptococcus pneumoniae R6

42.254

97.706

0.413

  cclA/cilC Streptococcus mitis NCTC 12261

41.86

98.624

0.413

  cclA/cilC Streptococcus pneumoniae TIGR4

41.315

97.706

0.404