Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   FR741_RS01975 Genome accession   NZ_CP042451
Coordinates   414065..414709 (-) Length   214 a.a.
NCBI ID   WP_005397417.1    Uniprot ID   A0AAQ2J3W0
Organism   Vibrio diabolicus strain FA3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 410534..432042 414065..414709 within 0


Gene organization within MGE regions


Location: 410534..432042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR741_RS01970 (FR741_02075) galU 413034..413906 (-) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FR741_RS01975 (FR741_02080) qstR 414065..414709 (-) 645 WP_005397417.1 LuxR C-terminal-related transcriptional regulator Regulator
  FR741_RS01980 (FR741_02085) ssb 414987..415523 (+) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  FR741_RS01985 (FR741_02090) - 415689..416963 (+) 1275 WP_167426198.1 site-specific integrase -
  FR741_RS01990 (FR741_02095) - 416976..418574 (+) 1599 WP_233059793.1 tyrosine-type recombinase/integrase -
  FR741_RS01995 (FR741_02100) - 418583..420817 (+) 2235 WP_233059803.1 hypothetical protein -
  FR741_RS02000 (FR741_02105) - 420810..421220 (+) 411 WP_167426200.1 hypothetical protein -
  FR741_RS02005 (FR741_02110) - 421236..421760 (+) 525 WP_167426201.1 hypothetical protein -
  FR741_RS02010 (FR741_02115) - 421771..424056 (+) 2286 WP_167426202.1 AAA family ATPase -
  FR741_RS02015 (FR741_02120) - 424237..424917 (+) 681 WP_167426203.1 hypothetical protein -
  FR741_RS02020 (FR741_02125) - 424928..425593 (+) 666 WP_167426204.1 RES domain-containing protein -
  FR741_RS02025 (FR741_02130) - 425570..425830 (-) 261 WP_408646615.1 hypothetical protein -
  FR741_RS02030 (FR741_02135) - 425902..426099 (-) 198 WP_167426205.1 hypothetical protein -
  FR741_RS23555 (FR741_02140) - 426074..426295 (-) 222 WP_167426206.1 hypothetical protein -
  FR741_RS02040 (FR741_02145) - 426357..427679 (-) 1323 WP_167427056.1 HipA domain-containing protein -
  FR741_RS02045 (FR741_02150) - 427669..428208 (-) 540 WP_167426207.1 hypothetical protein -
  FR741_RS02050 (FR741_02155) - 428314..428523 (+) 210 WP_001898369.1 helix-turn-helix domain-containing protein -
  FR741_RS02055 (FR741_02160) - 428896..429150 (+) 255 WP_167426208.1 killer suppression protein HigA -
  FR741_RS02060 (FR741_02165) - 429137..430228 (+) 1092 WP_167426209.1 ImmA/IrrE family metallo-endopeptidase -
  FR741_RS02065 (FR741_02170) - 430229..431173 (-) 945 WP_167426210.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24483.41 Da        Isoelectric Point: 9.7165

>NTDB_id=377981 FR741_RS01975 WP_005397417.1 414065..414709(-) (qstR) [Vibrio diabolicus strain FA3]
MRKSAYARKLFLISMEDNAQKKVAALEKYIDMSIPVISTEALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGLFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=377981 FR741_RS01975 WP_005397417.1 414065..414709(-) (qstR) [Vibrio diabolicus strain FA3]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAGGTGGCAGCACTCGA
AAAGTACATTGATATGAGCATCCCGGTGATTTCAACCGAAGCACTCATGGAAGCTAAGCCACAGCATCGTAATAAAATCC
TACTGATCGACTTCAGTGAACATAAATCACTCGTTCAATCGATCAAAAACTTACCGCTGGTATGGAAGAACTTTGAAACC
GTTGTGTTCAATGTCCCTAAAAGGCTGACCACGGATGAGCTTCTTTCATTTGGTCAATTAAAGGGGCTGTTCTATTCCGA
AGATACGCTAGAGCAAATTGGAGAAGGATTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGTAACGTCATTAATACTCATACTGCCCCAGCCACGGTAGACCTAACCATTCGCGAGCTGCAA
GTACTGCGTTGCTTGCAAGCTGGCGCATCGAACAGCCAAATGGCCGAGGAATTATTTGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCAGTGAAGAATCGCGTTCAGGCTATCGCGTGGGCAGATCAAAACTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

95.794

100

0.958
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment