Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FR741_RS01980 Genome accession   NZ_CP042451
Coordinates   414987..415523 (+) Length   178 a.a.
NCBI ID   WP_012841367.1    Uniprot ID   A0AAE4M8V6
Organism   Vibrio diabolicus strain FA3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 409987..420523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR741_RS01965 (FR741_02070) uvrA 410062..412884 (-) 2823 WP_167426197.1 excinuclease ABC subunit UvrA -
  FR741_RS01970 (FR741_02075) galU 413034..413906 (-) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FR741_RS01975 (FR741_02080) qstR 414065..414709 (-) 645 WP_005397417.1 LuxR C-terminal-related transcriptional regulator Regulator
  FR741_RS01980 (FR741_02085) ssb 414987..415523 (+) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  FR741_RS01985 (FR741_02090) - 415689..416963 (+) 1275 WP_167426198.1 site-specific integrase -
  FR741_RS01990 (FR741_02095) - 416976..418574 (+) 1599 WP_233059793.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19791.83 Da        Isoelectric Point: 4.9164

>NTDB_id=377982 FR741_RS01980 WP_012841367.1 414987..415523(+) (ssb) [Vibrio diabolicus strain FA3]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRGQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=377982 FR741_RS01980 WP_012841367.1 414987..415523(+) (ssb) [Vibrio diabolicus strain FA3]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAACGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGTTCTCAAGTATACATT
GAAGGCCAACTGCAAACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTTGGCGGTCGTGGTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAACAGCAGGCTCCGCAGCAA
CCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.815
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.601
  ssb Neisseria meningitidis MC58

46.927

100

0.472
  ssb Neisseria gonorrhoeae MS11

43.85

100

0.461

Multiple sequence alignment