Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FR741_RS01980 Genome accession   NZ_CP042451
Coordinates   414987..415523 (+) Length   178 a.a.
NCBI ID   WP_012841367.1    Uniprot ID   A0AAE4M8V6
Organism   Vibrio diabolicus strain FA3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 410534..432042 414987..415523 within 0


Gene organization within MGE regions


Location: 410534..432042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR741_RS01970 (FR741_02075) galU 413034..413906 (-) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FR741_RS01975 (FR741_02080) qstR 414065..414709 (-) 645 WP_005397417.1 LuxR C-terminal-related transcriptional regulator Regulator
  FR741_RS01980 (FR741_02085) ssb 414987..415523 (+) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  FR741_RS01985 (FR741_02090) - 415689..416963 (+) 1275 WP_167426198.1 site-specific integrase -
  FR741_RS01990 (FR741_02095) - 416976..418574 (+) 1599 WP_233059793.1 tyrosine-type recombinase/integrase -
  FR741_RS01995 (FR741_02100) - 418583..420817 (+) 2235 WP_233059803.1 hypothetical protein -
  FR741_RS02000 (FR741_02105) - 420810..421220 (+) 411 WP_167426200.1 hypothetical protein -
  FR741_RS02005 (FR741_02110) - 421236..421760 (+) 525 WP_167426201.1 hypothetical protein -
  FR741_RS02010 (FR741_02115) - 421771..424056 (+) 2286 WP_167426202.1 AAA family ATPase -
  FR741_RS02015 (FR741_02120) - 424237..424917 (+) 681 WP_167426203.1 hypothetical protein -
  FR741_RS02020 (FR741_02125) - 424928..425593 (+) 666 WP_167426204.1 RES domain-containing protein -
  FR741_RS02025 (FR741_02130) - 425570..425830 (-) 261 WP_408646615.1 hypothetical protein -
  FR741_RS02030 (FR741_02135) - 425902..426099 (-) 198 WP_167426205.1 hypothetical protein -
  FR741_RS23555 (FR741_02140) - 426074..426295 (-) 222 WP_167426206.1 hypothetical protein -
  FR741_RS02040 (FR741_02145) - 426357..427679 (-) 1323 WP_167427056.1 HipA domain-containing protein -
  FR741_RS02045 (FR741_02150) - 427669..428208 (-) 540 WP_167426207.1 hypothetical protein -
  FR741_RS02050 (FR741_02155) - 428314..428523 (+) 210 WP_001898369.1 helix-turn-helix domain-containing protein -
  FR741_RS02055 (FR741_02160) - 428896..429150 (+) 255 WP_167426208.1 killer suppression protein HigA -
  FR741_RS02060 (FR741_02165) - 429137..430228 (+) 1092 WP_167426209.1 ImmA/IrrE family metallo-endopeptidase -
  FR741_RS02065 (FR741_02170) - 430229..431173 (-) 945 WP_167426210.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19791.83 Da        Isoelectric Point: 4.9164

>NTDB_id=377982 FR741_RS01980 WP_012841367.1 414987..415523(+) (ssb) [Vibrio diabolicus strain FA3]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRGQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=377982 FR741_RS01980 WP_012841367.1 414987..415523(+) (ssb) [Vibrio diabolicus strain FA3]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAACGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGTTCTCAAGTATACATT
GAAGGCCAACTGCAAACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTTGGCGGTCGTGGTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAACAGCAGGCTCCGCAGCAA
CCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.815
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.601
  ssb Neisseria meningitidis MC58

46.927

100

0.472
  ssb Neisseria gonorrhoeae MS11

43.85

100

0.461

Multiple sequence alignment