Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | FR741_RS01760 | Genome accession | NZ_CP042451 |
| Coordinates | 363857..364450 (+) | Length | 197 a.a. |
| NCBI ID | WP_012841351.1 | Uniprot ID | A0AAE4SAG9 |
| Organism | Vibrio diabolicus strain FA3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 358857..369450
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR741_RS01745 (FR741_01840) | - | 359584..362145 (-) | 2562 | WP_104974736.1 | penicillin-binding protein 1A | - |
| FR741_RS01750 (FR741_01845) | pilM | 362289..363305 (+) | 1017 | WP_046874633.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| FR741_RS01755 (FR741_01850) | pilN | 363289..363864 (+) | 576 | WP_005395717.1 | PilN domain-containing protein | Machinery gene |
| FR741_RS01760 (FR741_01855) | pilO | 363857..364450 (+) | 594 | WP_012841351.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FR741_RS01765 (FR741_01860) | pilP | 364440..364955 (+) | 516 | WP_005395715.1 | pilus assembly protein PilP | Machinery gene |
| FR741_RS01770 (FR741_01865) | pilQ | 364981..366729 (+) | 1749 | WP_006742777.1 | type IV pilus secretin PilQ | Machinery gene |
| FR741_RS01775 (FR741_01870) | aroK | 366917..367435 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FR741_RS01780 (FR741_01875) | aroB | 367468..368568 (+) | 1101 | WP_167426188.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23042.45 Da Isoelectric Point: 4.7906
>NTDB_id=377978 FR741_RS01760 WP_012841351.1 363857..364450(+) (pilO) [Vibrio diabolicus strain FA3]
MVDWQDLEIDEMAEWPLLPQLVVIALLIFLIQGFGYWFYLKPKEEQLNNLVQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETNNDK
MVDWQDLEIDEMAEWPLLPQLVVIALLIFLIQGFGYWFYLKPKEEQLNNLVQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETNNDK
Nucleotide
Download Length: 594 bp
>NTDB_id=377978 FR741_RS01760 WP_012841351.1 363857..364450(+) (pilO) [Vibrio diabolicus strain FA3]
ATGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCAGAGTGGCCATTGTTGCCTCAGCTTGTGGTTATCGCGCTGCT
GATTTTCCTAATTCAAGGTTTTGGCTATTGGTTTTACCTTAAGCCAAAAGAAGAGCAATTGAATAACTTGGTCCAGCAGG
AGCAGACGCTCAAGGTAGCACTGAAGATCAAAGCGAACAAAGTAGCTGCATTGCCTCAGCTTCAATCTCAATTGGATGAA
CTCACCACGCGTTACGAGTTATTACTACAACAACTGCCCGCGCAAAAAGAGTTGGCTACGATGCTCGCTTCGGTGAATGA
ACTCGGTATCGACAATAAGTTGACCTTTACCCGTATCGACTGGGGTGAGAAGCAATCAGAGCATTTCCTCTATCGTCTTC
CTTTAAACATTGAGTTAACGGGTGATTTTCATGACATTGGACATTTTTCTCAGGCGATAGCAACGCTACCTCGAATCATC
ACGTTCAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAAAGTGAAACTCTGCACTTTAGGGTACGAGCCAATACCTATCA
GTTTAAGCCAGAGGAGACGAACAATGACAAGTAA
ATGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCAGAGTGGCCATTGTTGCCTCAGCTTGTGGTTATCGCGCTGCT
GATTTTCCTAATTCAAGGTTTTGGCTATTGGTTTTACCTTAAGCCAAAAGAAGAGCAATTGAATAACTTGGTCCAGCAGG
AGCAGACGCTCAAGGTAGCACTGAAGATCAAAGCGAACAAAGTAGCTGCATTGCCTCAGCTTCAATCTCAATTGGATGAA
CTCACCACGCGTTACGAGTTATTACTACAACAACTGCCCGCGCAAAAAGAGTTGGCTACGATGCTCGCTTCGGTGAATGA
ACTCGGTATCGACAATAAGTTGACCTTTACCCGTATCGACTGGGGTGAGAAGCAATCAGAGCATTTCCTCTATCGTCTTC
CTTTAAACATTGAGTTAACGGGTGATTTTCATGACATTGGACATTTTTCTCAGGCGATAGCAACGCTACCTCGAATCATC
ACGTTCAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAAAGTGAAACTCTGCACTTTAGGGTACGAGCCAATACCTATCA
GTTTAAGCCAGAGGAGACGAACAATGACAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
88.947 |
96.447 |
0.858 |
| pilO | Vibrio cholerae strain A1552 |
70.051 |
100 |
0.701 |