Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FR741_RS01755 Genome accession   NZ_CP042451
Coordinates   363289..363864 (+) Length   191 a.a.
NCBI ID   WP_005395717.1    Uniprot ID   A0AAE4S901
Organism   Vibrio diabolicus strain FA3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358289..368864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR741_RS01740 (FR741_01835) oxyR 358621..359532 (+) 912 WP_005395720.1 DNA-binding transcriptional regulator OxyR -
  FR741_RS01745 (FR741_01840) - 359584..362145 (-) 2562 WP_104974736.1 penicillin-binding protein 1A -
  FR741_RS01750 (FR741_01845) pilM 362289..363305 (+) 1017 WP_046874633.1 type IV pilus biogenesis protein PilM Machinery gene
  FR741_RS01755 (FR741_01850) pilN 363289..363864 (+) 576 WP_005395717.1 PilN domain-containing protein Machinery gene
  FR741_RS01760 (FR741_01855) pilO 363857..364450 (+) 594 WP_012841351.1 type 4a pilus biogenesis protein PilO Machinery gene
  FR741_RS01765 (FR741_01860) pilP 364440..364955 (+) 516 WP_005395715.1 pilus assembly protein PilP Machinery gene
  FR741_RS01770 (FR741_01865) pilQ 364981..366729 (+) 1749 WP_006742777.1 type IV pilus secretin PilQ Machinery gene
  FR741_RS01775 (FR741_01870) aroK 366917..367435 (+) 519 WP_005381319.1 shikimate kinase AroK -
  FR741_RS01780 (FR741_01875) aroB 367468..368568 (+) 1101 WP_167426188.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22325.80 Da        Isoelectric Point: 7.0774

>NTDB_id=377977 FR741_RS01755 WP_005395717.1 363289..363864(+) (pilN) [Vibrio diabolicus strain FA3]
MLYRINLLPWRENQREEHRRRFISLVALGMLVAIGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVPEKKAEAQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=377977 FR741_RS01755 WP_005395717.1 363289..363864(+) (pilN) [Vibrio diabolicus strain FA3]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAACCAAAGAGAAGAGCACCGACGTCGTTTCATTAGCTTGGTCGC
GTTAGGCATGTTGGTCGCCATTGGTATTCAATGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAGCAGCAGGAGC
GGCTTGATTACCTTACTCACTACATTGCTGAGCTCGACCAGCGTATTGAAGCAATGAAAATCGCCGAGCAAGAGCACAGC
AAAATCCTCGAACGTTTAAAAGTGGTTGAAGGGTTACAAAACGGTAGAAACAAAACGACCGAGTTTATGAACTTGATGCC
AGCCGTCATTCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCGGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGTTCGGCCAAGTTGAATGATGTAGAAATGCACTCCATCGTT
CACGGAAAAGCGCGTTTTGGAAAAGAGTTCCAAACGTTCAAAGTGTCTTTCATGTTCAAAGTGCCGGAGAAGAAAGCGGA
GGCCCAGCATGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.246

100

0.832
  pilN Vibrio cholerae strain A1552

60.106

98.429

0.592

Multiple sequence alignment