Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   FR729_RS11960 Genome accession   NZ_CP042449
Coordinates   2541034..2541678 (+) Length   214 a.a.
NCBI ID   WP_167415481.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FA2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2536034..2546678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR729_RS11945 (FR729_12305) - 2536508..2537953 (-) 1446 WP_167415479.1 MSHA biogenesis protein MshI -
  FR729_RS11950 (FR729_12310) csrD 2537965..2539974 (-) 2010 WP_167415480.1 RNase E specificity factor CsrD -
  FR729_RS11955 (FR729_12315) ssb 2540217..2540756 (-) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  FR729_RS11960 (FR729_12320) qstR 2541034..2541678 (+) 645 WP_167415481.1 LuxR C-terminal-related transcriptional regulator Regulator
  FR729_RS11965 (FR729_12325) galU 2541838..2542710 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FR729_RS11970 (FR729_12330) uvrA 2542860..2545682 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24378.27 Da        Isoelectric Point: 9.7169

>NTDB_id=377949 FR729_RS11960 WP_167415481.1 2541034..2541678(+) (qstR) [Vibrio alginolyticus strain FA2]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHHNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=377949 FR729_RS11960 WP_167415481.1 2541034..2541678(+) (qstR) [Vibrio alginolyticus strain FA2]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCATAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAATTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACAGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAAGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.393

100

0.944
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

51.869

100

0.519

Multiple sequence alignment