Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FR729_RS11955 | Genome accession | NZ_CP042449 |
| Coordinates | 2540217..2540756 (-) | Length | 179 a.a. |
| NCBI ID | WP_005387798.1 | Uniprot ID | A0A2I3CBE0 |
| Organism | Vibrio alginolyticus strain FA2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2535217..2545756
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR729_RS11935 (FR729_12295) | - | 2535536..2535868 (-) | 333 | WP_005381196.1 | hypothetical protein | - |
| FR729_RS11940 (FR729_12300) | gspM | 2535861..2536511 (-) | 651 | WP_005381197.1 | type II secretion system protein GspM | - |
| FR729_RS11945 (FR729_12305) | - | 2536508..2537953 (-) | 1446 | WP_167415479.1 | MSHA biogenesis protein MshI | - |
| FR729_RS11950 (FR729_12310) | csrD | 2537965..2539974 (-) | 2010 | WP_167415480.1 | RNase E specificity factor CsrD | - |
| FR729_RS11955 (FR729_12315) | ssb | 2540217..2540756 (-) | 540 | WP_005387798.1 | single-stranded DNA-binding protein | Machinery gene |
| FR729_RS11960 (FR729_12320) | qstR | 2541034..2541678 (+) | 645 | WP_167415481.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| FR729_RS11965 (FR729_12325) | galU | 2541838..2542710 (+) | 873 | WP_005381239.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| FR729_RS11970 (FR729_12330) | uvrA | 2542860..2545682 (+) | 2823 | WP_005381241.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19902.97 Da Isoelectric Point: 4.9164
>NTDB_id=377948 FR729_RS11955 WP_005387798.1 2540217..2540756(-) (ssb) [Vibrio alginolyticus strain FA2]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=377948 FR729_RS11955 WP_005387798.1 2540217..2540756(-) (ssb) [Vibrio alginolyticus strain FA2]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTAGTTGTTCAAGGCTT
CAATGGTGTTATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTAGTTGTTCAAGGCTT
CAATGGTGTTATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
79.781 |
100 |
0.816 |
| ssb | Glaesserella parasuis strain SC1401 |
54.922 |
100 |
0.592 |
| ssb | Neisseria meningitidis MC58 |
45.405 |
100 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
46.369 |
100 |
0.464 |