Detailed information NTG0377944

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FR729_RS10995
• Genome accession: NZ_CP042449
• Coordinates: 2355494..2356480 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain FA2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2350494..2361480

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FR729_RS10980 (FR729_11320)	recA	2351039..2352082 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
FR729_RS10985 (FR729_11325)	pncC	2352283..2352765 (-)	483	WP_005383794.1	nicotinamide-nucleotide amidase	-
FR729_RS10990 (FR729_11330)	mutS	2352850..2355411 (+)	2562	WP_167415441.1	DNA mismatch repair protein MutS	-
FR729_RS10995 (FR729_11335)	rpoS	2355494..2356480 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
FR729_RS11000 (FR729_11340)	-	2356561..2357484 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
FR729_RS11005 (FR729_11345)	-	2357498..2358124 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FR729_RS11010 (FR729_11350)	surE	2358124..2358900 (-)	777	WP_167415442.1	5'/3'-nucleotidase SurE	-
FR729_RS11015 (FR729_11355)	truD	2358900..2359943 (-)	1044	WP_167415443.1	tRNA pseudouridine(13) synthase TruD	-
FR729_RS11020 (FR729_11360)	ispF	2359989..2360465 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FR729_RS11025 (FR729_11365)	ispD	2360479..2361186 (-)	708	WP_137282365.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FR729_RS11030 (FR729_11370)	ftsB	2361188..2361469 (-)	282	WP_167415444.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=377944 FR729_RS10995 WP_005380887.1 2355494..2356480(-) (rpoS) [Vibrio alginolyticus strain FA2]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=377944 FR729_RS10995 WP_005380887.1 2355494..2356480(-) (rpoS) [Vibrio alginolyticus strain FA2]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854