Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL86_RS02320 Genome accession   NZ_CP042382
Coordinates   503775..504320 (-) Length   181 a.a.
NCBI ID   WP_147183093.1    Uniprot ID   A0A5B8SP10
Organism   Pistricoccus aurantiacus strain CBA4606     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 498775..509320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL86_RS02300 (FGL86_02300) fabA 500270..500785 (+) 516 WP_147183090.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  FGL86_RS02305 (FGL86_02305) fabB 500799..502016 (+) 1218 WP_147183091.1 beta-ketoacyl-ACP synthase I -
  FGL86_RS02310 (FGL86_02310) - 502067..502843 (-) 777 WP_186764512.1 lysophospholipid acyltransferase family protein -
  FGL86_RS02315 (FGL86_02315) - 502883..503752 (-) 870 WP_147183092.1 sugar nucleotide-binding protein -
  FGL86_RS02320 (FGL86_02320) ssb 503775..504320 (-) 546 WP_147183093.1 single-stranded DNA-binding protein Machinery gene
  FGL86_RS02325 (FGL86_02325) - 504425..505807 (-) 1383 WP_147183094.1 MFS transporter -
  FGL86_RS02330 (FGL86_02330) uvrA 505984..508836 (+) 2853 WP_147183095.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19881.44 Da        Isoelectric Point: 5.2138

>NTDB_id=377518 FGL86_RS02320 WP_147183093.1 503775..504320(-) (ssb) [Pistricoccus aurantiacus strain CBA4606]
MARGINKVILIGNLGQDPDVRYTQSGSAVTNLNLATSDSWTDKQSGQRQERTEWHRVVMFNKLAEIAQQYLRKGSKVYIE
GRIQTRKWQGQDGQDRYSTEIVANDMQMLDSRGGQGADYAQGAQQGGYANASQGGGQRSTQSSQGQGQQGGNPQQGNNQQ
NNNYGAPNPGSFDDFDDEIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=377518 FGL86_RS02320 WP_147183093.1 503775..504320(-) (ssb) [Pistricoccus aurantiacus strain CBA4606]
ATGGCCCGTGGTATCAACAAGGTCATTCTCATCGGTAACCTGGGTCAGGATCCCGATGTTCGCTATACCCAGTCCGGCTC
GGCGGTGACCAATCTCAATCTCGCCACCAGTGATAGCTGGACCGACAAGCAGAGCGGCCAGCGCCAGGAACGCACCGAAT
GGCACCGGGTGGTGATGTTCAACAAGCTTGCGGAGATCGCACAGCAGTATCTGCGCAAGGGTTCCAAGGTGTATATCGAA
GGCCGGATCCAGACCCGTAAATGGCAGGGCCAGGACGGCCAGGATCGCTACAGCACCGAGATCGTCGCCAACGATATGCA
GATGCTCGATAGCCGGGGCGGCCAGGGAGCGGATTACGCGCAAGGCGCTCAGCAGGGCGGGTATGCCAATGCGTCTCAAG
GCGGCGGGCAACGTTCCACCCAGTCATCGCAAGGCCAGGGCCAGCAGGGCGGCAATCCTCAGCAGGGTAACAACCAGCAG
AACAACAATTACGGTGCGCCCAATCCCGGGAGCTTCGACGACTTCGACGATGAGATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8SP10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.91

100

0.552
  ssb Glaesserella parasuis strain SC1401

49.733

100

0.514
  ssb Neisseria gonorrhoeae MS11

46.961

100

0.47
  ssb Neisseria meningitidis MC58

45.763

97.79

0.448

Multiple sequence alignment