Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FR838_RS09340 Genome accession   NZ_CP042364
Coordinates   1930583..1931170 (-) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain C54     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1925583..1936170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR838_RS09315 (FR838_09315) - 1925598..1927097 (+) 1500 WP_016805962.1 PLP-dependent aminotransferase family protein -
  FR838_RS09320 (FR838_09320) - 1927162..1928604 (-) 1443 WP_002117418.1 amino acid permease -
  FR838_RS09325 (FR838_09325) ydcN 1928910..1929458 (-) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  FR838_RS09330 (FR838_09330) - 1929527..1930222 (+) 696 WP_005078600.1 AzlC family ABC transporter permease -
  FR838_RS09335 (FR838_09335) - 1930219..1930542 (+) 324 WP_002117414.1 AzlD domain-containing protein -
  FR838_RS09340 (FR838_09340) ssb 1930583..1931170 (-) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  FR838_RS09345 (FR838_09345) yajR 1931222..1932586 (-) 1365 WP_005078603.1 MFS transporter -
  FR838_RS09350 (FR838_09350) - 1932733..1933815 (-) 1083 WP_005066886.1 DUF475 domain-containing protein -
  FR838_RS09355 (FR838_09355) tenA 1934079..1934753 (+) 675 WP_005078605.1 thiaminase II -
  FR838_RS09360 (FR838_09360) - 1934820..1935191 (+) 372 WP_005078608.1 MerR family transcriptional regulator -
  FR838_RS09365 (FR838_09365) - 1935295..1936101 (+) 807 WP_044430885.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=377442 FR838_RS09340 WP_005066890.1 1930583..1931170(-) (ssb) [Acinetobacter pittii strain C54]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=377442 FR838_RS09340 WP_005066890.1 1930583..1931170(-) (ssb) [Acinetobacter pittii strain C54]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCGCCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385

Multiple sequence alignment