Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   FR838_RS08530 Genome accession   NZ_CP042364
Coordinates   1775380..1779234 (-) Length   1284 a.a.
NCBI ID   WP_005078458.1    Uniprot ID   -
Organism   Acinetobacter pittii strain C54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1770380..1784234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR838_RS08495 (FR838_08495) lip 1771119..1772060 (+) 942 WP_014207808.1 lipase family alpha/beta hydrolase -
  FR838_RS08500 (FR838_08500) rplS 1772112..1772480 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  FR838_RS08505 (FR838_08505) trmD 1772700..1773455 (-) 756 WP_005078451.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FR838_RS08510 (FR838_08510) rimM 1773498..1774046 (-) 549 WP_005078453.1 ribosome maturation factor RimM -
  FR838_RS08515 (FR838_08515) rpsP 1774066..1774317 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  FR838_RS08520 (FR838_08520) pilE 1774465..1774890 (-) 426 WP_005078455.1 type IV pilin protein Machinery gene
  FR838_RS08525 (FR838_08525) pilY2 1774887..1775369 (-) 483 WP_005078457.1 type IV pilin protein Machinery gene
  FR838_RS08530 (FR838_08530) pilY1 1775380..1779234 (-) 3855 WP_005078458.1 PilC/PilY family type IV pilus protein Machinery gene
  FR838_RS08535 (FR838_08535) pilX 1779246..1780055 (-) 810 WP_005078460.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FR838_RS08540 (FR838_08540) pilW 1780052..1781053 (-) 1002 WP_002116811.1 PilW family protein Machinery gene
  FR838_RS08545 (FR838_08545) pilV 1781053..1781613 (-) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  FR838_RS08550 (FR838_08550) fimU 1781607..1782080 (-) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  FR838_RS08555 (FR838_08555) ispH 1782250..1783200 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FR838_RS08560 (FR838_08560) gmk 1783323..1783952 (+) 630 WP_002116973.1 guanylate kinase -

Sequence

Protein


Download         Length: 1284 a.a.        Molecular weight: 137938.39 Da        Isoelectric Point: 7.7449

>NTDB_id=377432 FR838_RS08530 WP_005078458.1 1775380..1779234(-) (pilY1) [Acinetobacter pittii strain C54]
MKLKLKNFKPNNLWYAICSSSVAFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQVLVAAAPLGDASTLNTVGSQRYKLKQAVANLTAGGSTPSAHAYAEAAAYLM
GTTTYSEANYAIRKDSYIRRVRKSDNRTEYSYCTNYRDSQIDTTNLWQPCRSNNYWSNWSTSNPGVDTATAYDTSSDWTY
SYTYYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNASNLNAIYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTR
SATVMSTALGSTLGANFTCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLS
SRTQADRKSDDNCSPNQTTNAVAAPGYGNGGFFPTQSAQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEY
GYLRAFEPNPANTYLTWRGNLKKYHVVLSGTNAGAFEANTGGLVYNATGAFRTGTKDYWNSSTYNDGGKVFFGGSYAKVP
LPIAGQNETRDEEGNITKYYYAVQTKIRNLFTDVSAVASDGSLTKLSTSGTNLLKIPAAPPEGTNPFDSVANTASYVLGK
FNASTGQDILKAFPISLKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQS
ILYGTMEGGLHIVDASTGVEQMAFVPADILNDPVASKALVVGQSDATAPAHGMDGAWVSDPAYSITTTGSGSSAVSKVTA
KQMNIYGGMRMGGSSYYGLNVLNPASPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNI
TLSNSCFTNGKAKGNAVYIIDAKTGERLWWTSDTGSNIDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLN
NNQTKTNSTYSSFGIRVVRLANLATNDSTYDASNDYTAGNAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLT
GREGMSPSTALSGRPVNNVYGIIDKDFIKKNLMSLTDSQLETKDITRSTLRKNPQILRSGETRVAQIFFPNTGGGQSGWY
RSLSSMSDGTEKANNSFRIKGGLKAFEEPMAVTGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTFCLPFGACLNSDGS
IDQNKENGSGFKTQTGTNCPVGASECNKNVIGSGIRGIAFVPKRDEPPVTNSCGKLQLSGNESGTGEWQCTSHLVPTRWY
ERYR

Nucleotide


Download         Length: 3855 bp        

>NTDB_id=377432 FR838_RS08530 WP_005078458.1 1775380..1779234(-) (pilY1) [Acinetobacter pittii strain C54]
GTGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGTTCAGTTGCTTTTACATGGCT
AATGACAAGCTCCGTTGTGCAGGCGAGTGATTTACAAATTTATGCTTCACCTACAGCTGGTAAAAAAACCATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGCGAAAACCGTCTGGCTATGCTTAAAAATGGTATGAATGCT
TTTTTAGCAAGTAATAATCCTGTTTTAAATGACACTCGTGTGGGGTTGGGAAATTTCTCTGCAAATGGTGATAGCCGAAG
TGGGCAGGTTCTAGTGGCTGCTGCTCCTTTAGGAGATGCGAGTACGTTAAATACAGTGGGTTCTCAACGTTATAAATTAA
AACAGGCTGTTGCAAATTTAACTGCTGGCGGGTCAACGCCTTCAGCACATGCTTATGCGGAAGCTGCTGCTTATTTGATG
GGTACAACGACCTATTCAGAGGCAAATTATGCCATTCGAAAAGATAGCTATATAAGGCGTGTGCGAAAATCTGATAATAG
AACGGAATACTCATATTGTACGAATTATCGCGATTCACAAATCGATACTACAAATCTATGGCAACCTTGTCGCTCTAATA
ACTATTGGAGTAACTGGTCAACTTCTAATCCGGGTGTGGATACGGCAACTGCTTATGATACTTCGTCGGATTGGACCTAT
TCTTATACTTATTACTACACCACCTTTAATTATGCTGTAGCAAATGCAGATAGTGGTATCCCAAAATCAAAATCAAATGA
TACAGCTAGCAATCCCAATATTGTTGTAGATAGAAATGCCTCTAATTTAAATGCCATTTACCAATCTCCTTTGCCTGCGG
TGGCCAATCGTCAGAGTTGTGATGGGCAAGGAATCTACTTTTTATCAGATGGAGAACCGAACAATACAACAAATACACGT
TCGGCAACTGTAATGTCGACAGCCCTAGGCAGCACTTTGGGAGCAAATTTTACTTGTTCTGGAGGTTTATCTAACACGAC
AGCAGACTCTGGTTGGGCCTGTATGGGGGAATTTGCAAAAAGATTATTTGATAAAACAAAAAATCCGGCTGGAGTTTCTA
TTCAAACAGCATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTAAGTTCTTCTGATGTAAAAAATGCCTGTCGTTTAAGT
TCGAGAACCCAAGCTGATCGTAAAAGTGATGATAATTGTTCGCCGAATCAGACCACAAATGCGGTCGCTGCACCAGGTTA
TGGAAATGGAGGATTTTTCCCTACCCAAAGTGCGCAAGGTGTAACAGATAGTGTTATCGCATTTATTAATAACTTAGATA
AAGTTCCTTTAGAACCCTTAACCACAGGTGCTATCTCTGTTCCTTATGATGCACTAAATCCTAAAAATTTACAGGAATAT
GGTTACTTACGTGCTTTTGAGCCAAACCCGGCTAACACCTACTTAACATGGCGAGGAAATTTAAAGAAATATCATGTTGT
TTTATCGGGAACAAATGCTGGTGCTTTCGAAGCTAATACTGGTGGGTTGGTTTACAACGCAACTGGGGCATTTAGAACGG
GTACGAAAGATTATTGGAATAGCTCTACTTATAATGATGGAGGTAAAGTCTTTTTTGGTGGTTCATATGCAAAAGTTCCT
TTACCAATTGCTGGACAAAATGAAACACGTGATGAAGAAGGAAATATCACAAAATATTATTACGCAGTACAAACTAAAAT
CCGCAACTTATTTACTGATGTTTCCGCCGTCGCATCAGATGGTAGCTTAACGAAGCTATCAACTTCTGGAACTAATTTGC
TAAAAATTCCAGCTGCTCCACCAGAAGGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAAA
TTTAATGCATCAACTGGACAAGATATTTTAAAAGCTTTCCCGATTAGCTTGAAATTAAAAATATTAAATTATCTAGGTTA
CTCAACTGATATTAGCGCTACGACTTTACCTTCGTCATTAGTTACATCGAATGAACCCTATTTATCGATGGGCGGTAGTA
TTCACTCTTTACCGGTACAACTTACCTATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGTGAACAATCC
ATTCTCTATGGAACGATGGAAGGTGGTCTGCATATTGTGGATGCCTCAACTGGTGTAGAACAAATGGCTTTCGTTCCTGC
CGATATATTAAATGATCCAGTTGCATCAAAAGCTTTAGTGGTTGGCCAAAGTGATGCTACAGCTCCTGCTCACGGTATGG
ATGGGGCTTGGGTATCTGACCCTGCATATAGTATTACTACAACAGGAAGCGGTAGTTCAGCAGTATCAAAAGTAACTGCA
AAGCAAATGAATATTTATGGTGGCATGCGAATGGGGGGCAGCAGCTATTATGGCTTAAATGTCTTAAATCCTGCTTCACC
TAAGCTTCTCTTTAGAGTAGGAGCAGATCAAACTGATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAA
ATATACGTTATAACGGAGTTATTAAACGGGTTATGATTGTTGGTGGTGGCTACGACCAATGTTATGAAAACCCGAATATT
ACCTTGAGTAATTCTTGCTTTACGAATGGAAAAGCAAAAGGGAATGCTGTTTATATTATTGATGCTAAAACTGGGGAACG
CTTATGGTGGACTAGTGATACAGGCTCTAATATAGATAACTCTAATATGAAGCACAGTATTGTTAGTCGCATTAGTACCT
TAGATCGAGATGCTGATGGTTTAGTCGACCATTTATATTTTGGCGATTTAGGCGGACAAATTTTCCGTATCGATCTTAAT
AATAACCAGACAAAAACAAATTCAACTTATAGCAGTTTCGGTATTCGAGTTGTTCGATTAGCCAATTTAGCAACGAATGA
CTCAACTTATGATGCCTCGAACGACTATACCGCTGGGAATGCGCCGCGTTTTTATGAACCGCCAACAGTGACAATTCACG
ATTATGGAATCCGCACTTTTATTACTGTCGGTATTGCTTCAGGTGACCGTAGTACACCTTTAGATGTTTATCCGCTTACA
GGTCGTGAGGGGATGTCACCGAGCACCGCATTAAGCGGAAGACCTGTAAACAATGTCTATGGGATTATCGATAAAGACTT
TATCAAAAAGAATCTGATGTCTTTAACAGATAGCCAGCTTGAAACAAAAGATATTACTCGATCGACGCTTCGAAAAAATC
CACAAATTTTACGATCTGGGGAAACACGAGTAGCACAGATTTTCTTTCCAAACACTGGGGGGGGGCAAAGTGGTTGGTAT
CGCTCACTTTCTAGTATGAGCGATGGCACAGAGAAAGCTAATAATAGTTTCCGTATTAAAGGAGGTCTTAAAGCTTTTGA
AGAACCTATGGCCGTTACGGGGACTTTAATTGTGCCTGTTTATGATCCGCAGGGAACAGGCATTGTAGCGGCAGACCCAT
GTTTACCCCGTGTAGTAGGTGAAACTGACCAGCAGACGTTCTGTTTACCATTTGGCGCCTGCCTTAATTCTGATGGGTCA
ATTGATCAAAATAAAGAGAATGGAAGTGGATTTAAAACACAAACTGGTACTAATTGCCCAGTAGGAGCTTCTGAATGTAA
TAAAAACGTTATTGGCTCCGGTATTCGCGGCATAGCATTTGTTCCAAAAAGAGATGAACCTCCAGTGACTAATAGTTGTG
GGAAATTACAACTGTCTGGAAACGAGAGTGGAACGGGCGAGTGGCAGTGTACAAGTCATTTAGTTCCTACACGCTGGTAT
GAGCGTTATCGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(715-965)

von Willebrand factor type A domain (VWA_2)

(51-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

85.194

100

0.856

Multiple sequence alignment