Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   FR838_RS08540 Genome accession   NZ_CP042364
Coordinates   1780052..1781053 (-) Length   333 a.a.
NCBI ID   WP_002116811.1    Uniprot ID   -
Organism   Acinetobacter pittii strain C54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1775052..1786053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR838_RS08530 (FR838_08530) pilY1 1775380..1779234 (-) 3855 WP_005078458.1 PilC/PilY family type IV pilus protein Machinery gene
  FR838_RS08535 (FR838_08535) pilX 1779246..1780055 (-) 810 WP_005078460.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FR838_RS08540 (FR838_08540) pilW 1780052..1781053 (-) 1002 WP_002116811.1 PilW family protein Machinery gene
  FR838_RS08545 (FR838_08545) pilV 1781053..1781613 (-) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  FR838_RS08550 (FR838_08550) fimU 1781607..1782080 (-) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  FR838_RS08555 (FR838_08555) ispH 1782250..1783200 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FR838_RS08560 (FR838_08560) gmk 1783323..1783952 (+) 630 WP_002116973.1 guanylate kinase -
  FR838_RS08565 (FR838_08565) rpoZ 1784025..1784303 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  FR838_RS08570 (FR838_08570) - 1784342..1784497 (+) 156 WP_014207816.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35802.50 Da        Isoelectric Point: 6.6395

>NTDB_id=377434 FR838_RS08540 WP_002116811.1 1780052..1781053(-) (pilW) [Acinetobacter pittii strain C54]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTASTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQMSVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=377434 FR838_RS08540 WP_002116811.1 1780052..1781053(-) (pilW) [Acinetobacter pittii strain C54]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTGGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGGCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACAACCCCTTGGGGCGGTGTTGTATTAACTGCTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACTTATATTGCTGACACATTACTTAGTCGTGGTGCAGGCGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACAAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGACTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATGTCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85

Multiple sequence alignment