Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | FR838_RS08550 | Genome accession | NZ_CP042364 |
| Coordinates | 1781607..1782080 (-) | Length | 157 a.a. |
| NCBI ID | WP_016802756.1 | Uniprot ID | A0A1C2SAU9 |
| Organism | Acinetobacter pittii strain C54 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1776607..1787080
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR838_RS08535 (FR838_08535) | pilX | 1779246..1780055 (-) | 810 | WP_005078460.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| FR838_RS08540 (FR838_08540) | pilW | 1780052..1781053 (-) | 1002 | WP_002116811.1 | PilW family protein | Machinery gene |
| FR838_RS08545 (FR838_08545) | pilV | 1781053..1781613 (-) | 561 | WP_080564113.1 | type IV pilus modification protein PilV | Machinery gene |
| FR838_RS08550 (FR838_08550) | fimU | 1781607..1782080 (-) | 474 | WP_016802756.1 | pilus assembly FimT family protein | Machinery gene |
| FR838_RS08555 (FR838_08555) | ispH | 1782250..1783200 (-) | 951 | WP_002116992.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| FR838_RS08560 (FR838_08560) | gmk | 1783323..1783952 (+) | 630 | WP_002116973.1 | guanylate kinase | - |
| FR838_RS08565 (FR838_08565) | rpoZ | 1784025..1784303 (+) | 279 | WP_002116990.1 | DNA-directed RNA polymerase subunit omega | - |
| FR838_RS08570 (FR838_08570) | - | 1784342..1784497 (+) | 156 | WP_014207816.1 | hypothetical protein | - |
| FR838_RS08575 (FR838_08575) | spoT | 1784513..1786618 (+) | 2106 | WP_002116807.1 | RelA/SpoT family protein | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16939.62 Da Isoelectric Point: 7.7942
>NTDB_id=377436 FR838_RS08550 WP_016802756.1 1781607..1782080(-) (fimU) [Acinetobacter pittii strain C54]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=377436 FR838_RS08550 WP_016802756.1 1781607..1782080(-) (fimU) [Acinetobacter pittii strain C54]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
87.898 |
100 |
0.879 |