Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FS593_RS01380 Genome accession   NZ_CP042361
Coordinates   305813..306343 (+) Length   176 a.a.
NCBI ID   WP_011915524.1    Uniprot ID   -
Organism   Lelliottia amnigena strain A167     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 300813..311343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FS593_RS01365 (FS593_01385) aphA 301557..302270 (+) 714 WP_235134516.1 acid phosphatase AphA -
  FS593_RS01370 (FS593_01390) - 302388..302741 (+) 354 WP_011915522.1 MmcQ/YjbR family DNA-binding protein -
  FS593_RS01375 (FS593_01395) uvrA 302745..305567 (-) 2823 WP_011915523.1 excinuclease ABC subunit UvrA -
  FS593_RS01380 (FS593_01400) ssb 305813..306343 (+) 531 WP_011915524.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FS593_RS01385 (FS593_01405) - 306442..306723 (-) 282 WP_011915525.1 YjcB family protein -
  FS593_RS01390 (FS593_01410) - 307227..308630 (+) 1404 WP_328284165.1 sensor domain-containing diguanylate cyclase -
  FS593_RS01395 (FS593_01415) - 308969..310555 (+) 1587 WP_235134519.1 EAL domain-containing protein -
  FS593_RS01400 (FS593_01420) soxS 310552..310878 (-) 327 WP_011915528.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18792.81 Da        Isoelectric Point: 5.2456

>NTDB_id=377375 FS593_RS01380 WP_011915524.1 305813..306343(+) (ssb) [Lelliottia amnigena strain A167]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKFTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGSWGQPQQPQGGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=377375 FS593_RS01380 WP_011915524.1 305813..306343(+) (ssb) [Lelliottia amnigena strain A167]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCATCGCGTTGTGCTGTTCGGCAAACTGGCCGAAGTGGCTGGTGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAGCTTCGTACCCGTAAATGGACCGATCAGTCCGGTGCAGAGAAGTTCACGACTGAAGTCGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGTGCTCCGGCAGGCGGCGGTCAGCAGCAGCAGGGCAGCTGGG
GTCAACCCCAACAGCCACAGGGCGGCGGCAACCAGTTTAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCCGCACCG
GCACCGTCTAACGAACCCCCAATGGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.691

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.667

100

0.477
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.477

Multiple sequence alignment