Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOZ74_RS07345 Genome accession   NZ_CP042344
Coordinates   1513103..1513633 (+) Length   176 a.a.
NCBI ID   WP_146912447.1    Uniprot ID   A0A5B8RVY6
Organism   Comamonas flocculans strain NLF-7-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1508103..1518633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOZ74_RS07335 (FOZ74_07335) corA 1510234..1511355 (-) 1122 WP_146912446.1 magnesium/cobalt transporter CorA -
  FOZ74_RS07340 (FOZ74_07340) - 1511784..1512965 (+) 1182 WP_146914120.1 MFS transporter -
  FOZ74_RS07345 (FOZ74_07345) ssb 1513103..1513633 (+) 531 WP_146912447.1 single-stranded DNA-binding protein Machinery gene
  FOZ74_RS07350 (FOZ74_07350) - 1513764..1514114 (-) 351 WP_146912448.1 HPF/RaiA family ribosome-associated protein -
  FOZ74_RS07355 (FOZ74_07355) - 1514300..1515169 (+) 870 WP_146912449.1 type 1 glutamine amidotransferase -
  FOZ74_RS07360 (FOZ74_07360) - 1515237..1515710 (-) 474 WP_146912450.1 peptidylprolyl isomerase -
  FOZ74_RS07365 (FOZ74_07365) - 1515771..1516835 (-) 1065 WP_146912451.1 endonuclease/exonuclease/phosphatase family protein -
  FOZ74_RS07370 (FOZ74_07370) - 1516978..1518195 (-) 1218 WP_146912452.1 MFS transporter -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19087.16 Da        Isoelectric Point: 5.8073

>NTDB_id=377184 FOZ74_RS07345 WP_146912447.1 1513103..1513633(+) (ssb) [Comamonas flocculans strain NLF-7-7]
MASVNKVILVGNLGRDPETRTFPSGDQVTNVTLATTNKWRDKQTGEAREHTEWHRLVFNGKLAEIAGQYLRKGSQIYVEG
SIRTRKWQAQDGQERYSTEIRVDVMQMLGSRPGQGGGSGGYGDDEGFGDAGSFDAPARRAAPARPAPMQRPAPAPVAAPQ
PPAASGFDDMEDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=377184 FOZ74_RS07345 WP_146912447.1 1513103..1513633(+) (ssb) [Comamonas flocculans strain NLF-7-7]
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGCAACCTCGGGCGCGACCCGGAGACGCGCACTTTCCCCAGCGGCGACCA
GGTCACCAACGTCACGCTGGCCACGACCAACAAGTGGCGCGACAAGCAGACCGGCGAGGCGCGCGAACACACCGAATGGC
ACCGCCTGGTGTTCAACGGCAAGCTGGCCGAGATCGCCGGCCAATACCTGCGCAAGGGCAGCCAGATCTATGTGGAAGGC
AGCATCCGCACGCGCAAGTGGCAGGCCCAGGACGGGCAGGAGCGCTACAGCACGGAAATCCGCGTGGACGTGATGCAGAT
GCTGGGCAGCCGGCCCGGCCAGGGTGGTGGCTCGGGCGGCTATGGCGACGACGAGGGTTTTGGCGACGCCGGCAGCTTCG
ACGCGCCCGCGCGCCGCGCGGCACCGGCGCGCCCTGCGCCCATGCAGCGCCCGGCGCCCGCCCCGGTGGCCGCGCCCCAG
CCGCCGGCCGCCTCGGGCTTTGACGACATGGAAGACGACATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8RVY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.562

100

0.562
  ssb Glaesserella parasuis strain SC1401

50

100

0.534
  ssb Neisseria meningitidis MC58

48.045

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.477

Multiple sequence alignment