Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FRG19_RS11480 Genome accession   NZ_CP042341
Coordinates   2403073..2403582 (-) Length   169 a.a.
NCBI ID   WP_023349922.1    Uniprot ID   A0A7X9WHU6
Organism   Staphylococcus capitis strain BN2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2398073..2408582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRG19_RS11440 (FRG19_11460) - 2399010..2399264 (-) 255 WP_002434433.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  FRG19_RS11445 (FRG19_11465) - 2399566..2399826 (+) 261 WP_002434577.1 hypothetical protein -
  FRG19_RS11450 (FRG19_11470) - 2399830..2400579 (-) 750 WP_194251336.1 amidohydrolase -
  FRG19_RS11455 (FRG19_11475) - 2400736..2400993 (+) 258 WP_049427030.1 helix-turn-helix transcriptional regulator -
  FRG19_RS11460 (FRG19_11480) - 2401064..2401417 (-) 354 WP_023349918.1 hypothetical protein -
  FRG19_RS11465 (FRG19_11485) - 2401501..2402073 (-) 573 WP_227959544.1 DUF5067 domain-containing protein -
  FRG19_RS11470 (FRG19_11490) - 2402201..2402455 (-) 255 WP_023349920.1 hypothetical protein -
  FRG19_RS11475 (FRG19_11495) rpsR 2402784..2403026 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  FRG19_RS11480 (FRG19_11500) ssbA 2403073..2403582 (-) 510 WP_023349922.1 single-stranded DNA-binding protein Machinery gene
  FRG19_RS11485 (FRG19_11505) rpsF 2403604..2403900 (-) 297 WP_002434058.1 30S ribosomal protein S6 -
  FRG19_RS11490 (FRG19_11510) - 2404033..2404197 (-) 165 Protein_2221 recombinase family protein -
  FRG19_RS11495 (FRG19_11515) - 2404313..2405059 (-) 747 WP_002434512.1 HAD family hydrolase -
  FRG19_RS11500 (FRG19_11520) - 2405063..2405479 (-) 417 WP_227489929.1 NUDIX hydrolase -
  FRG19_RS11505 (FRG19_11525) - 2405476..2406366 (-) 891 WP_030061331.1 DMT family transporter -
  FRG19_RS11510 (FRG19_11530) - 2406366..2406749 (-) 384 WP_030061333.1 NUDIX domain-containing protein -
  FRG19_RS11515 (FRG19_11535) - 2406762..2407439 (-) 678 WP_030061334.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18672.18 Da        Isoelectric Point: 4.5778

>NTDB_id=377174 FRG19_RS11480 WP_023349922.1 2403073..2403582(-) (ssbA) [Staphylococcus capitis strain BN2]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=377174 FRG19_RS11480 WP_023349922.1 2403073..2403582(-) (ssbA) [Staphylococcus capitis strain BN2]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9WHU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.483

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.562
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361

Multiple sequence alignment