Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPSA_RS01915 | Genome accession | NC_017361 |
| Coordinates | 396509..397519 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664461.1 | Uniprot ID | - |
| Organism | Helicobacter pylori SouthAfrica7 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 391509..402519
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSA_RS01870 (HPSA_01920) | - | 391543..391917 (-) | 375 | WP_000772146.1 | chemotaxis response regulator CheY | - |
| HPSA_RS01875 (HPSA_01925) | - | 392202..392804 (+) | 603 | WP_000291630.1 | outer membrane protein | - |
| HPSA_RS01885 (HPSA_01930) | - | 392936..393343 (-) | 408 | WP_000906113.1 | hypothetical protein | - |
| HPSA_RS01890 (HPSA_01935) | - | 393346..393588 (-) | 243 | WP_000944359.1 | PP0621 family protein | - |
| HPSA_RS01895 (HPSA_01940) | rsmG | 393582..394118 (-) | 537 | WP_001068797.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPSA_RS01900 (HPSA_01945) | queA | 394115..395152 (-) | 1038 | WP_000657348.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPSA_RS01905 (HPSA_01950) | tatC | 395153..395890 (-) | 738 | WP_000461209.1 | twin-arginine translocase subunit TatC | - |
| HPSA_RS01910 (HPSA_01955) | tatB | 395883..396380 (-) | 498 | WP_000467577.1 | Sec-independent protein translocase protein TatB | - |
| HPSA_RS01915 (HPSA_01960) | ruvB | 396509..397519 (-) | 1011 | WP_000664461.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPSA_RS01920 (HPSA_01965) | panB | 397519..398331 (-) | 813 | WP_000062648.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPSA_RS01925 (HPSA_01970) | - | 398478..399200 (+) | 723 | WP_014534749.1 | hypothetical protein | - |
| HPSA_RS01930 (HPSA_01975) | - | 399190..400029 (+) | 840 | WP_014534750.1 | outer membrane beta-barrel protein | - |
| HPSA_RS01935 (HPSA_01980) | - | 400038..400982 (+) | 945 | WP_000916042.1 | outer membrane beta-barrel protein | - |
| HPSA_RS01940 (HPSA_01985) | - | 400992..402314 (+) | 1323 | WP_000522739.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37323.31 Da Isoelectric Point: 6.1664
>NTDB_id=37712 HPSA_RS01915 WP_000664461.1 396509..397519(-) (ruvB) [Helicobacter pylori SouthAfrica7]
MKERIVNLETLDFETSQEVSLRPDLWEDYIGQEKIKNNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNALGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDESTIEDVIEPFLLANGYLERTAKGRIATPK
TYALLKIPTLRSQSLF
MKERIVNLETLDFETSQEVSLRPDLWEDYIGQEKIKNNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNALGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDESTIEDVIEPFLLANGYLERTAKGRIATPK
TYALLKIPTLRSQSLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=37712 HPSA_RS01915 WP_000664461.1 396509..397519(-) (ruvB) [Helicobacter pylori SouthAfrica7]
ATGAAAGAACGGATCGTCAATTTAGAAACTTTGGATTTTGAAACTTCCCAAGAAGTGAGTTTGCGCCCTGATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAACAATTTGCAAATCTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTTTTTTTTGGCCCACCGGGTTTGGGTAAAACCTCTATCAGTCATATTATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTCTCACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGATTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTTATTGGCGCTACTACT
AGAGCGGGAATGCTCTCTAACCCTTTGAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCTCTCATCATCAAAAAAGCCGCCGCCAAACTCAATCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCTAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCACTCGTTAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTAAATGCATTAGGCGTGAATGAATTAGGATTTGATGAAGCGGATTTAGCGTATTT
ATCCTTGTTAGCCAACGCTCAAGGAAAACCGGTTGGCTTGAACACGATTGCAGCGTCTATGAGGGAAGATGAAAGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGTAGGATCGCCACGCCTAAA
ACTTACGCGCTTTTAAAAATCCCCACTTTAAGATCTCAAAGTTTGTTTTAA
ATGAAAGAACGGATCGTCAATTTAGAAACTTTGGATTTTGAAACTTCCCAAGAAGTGAGTTTGCGCCCTGATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAACAATTTGCAAATCTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTTTTTTTTGGCCCACCGGGTTTGGGTAAAACCTCTATCAGTCATATTATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTCTCACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGATTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTTATTGGCGCTACTACT
AGAGCGGGAATGCTCTCTAACCCTTTGAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCTCTCATCATCAAAAAAGCCGCCGCCAAACTCAATCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCTAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCACTCGTTAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTAAATGCATTAGGCGTGAATGAATTAGGATTTGATGAAGCGGATTTAGCGTATTT
ATCCTTGTTAGCCAACGCTCAAGGAAAACCGGTTGGCTTGAACACGATTGCAGCGTCTATGAGGGAAGATGAAAGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGTAGGATCGCCACGCCTAAA
ACTTACGCGCTTTTAAAAATCCCCACTTTAAGATCTCAAAGTTTGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
95.833 |
100 |
0.958 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
54.18 |
96.131 |
0.521 |
| ruvB | Streptococcus pneumoniae TIGR4 |
51.084 |
96.131 |
0.491 |
| ruvB | Streptococcus pneumoniae R6 |
51.084 |
96.131 |
0.491 |
| ruvB | Streptococcus pneumoniae D39 |
51.084 |
96.131 |
0.491 |
| ruvB | Synechocystis sp. PCC 6803 |
51.923 |
92.857 |
0.482 |