Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HBA20_RS03605 Genome accession   NZ_CP050147
Coordinates   745842..746339 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain A5803     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 740842..751339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA20_RS03590 (HBA20_03590) bfr 740850..741314 (+) 465 WP_003093668.1 bacterioferritin -
  HBA20_RS03595 (HBA20_03595) uvrA 741386..744223 (-) 2838 WP_003110572.1 excinuclease ABC subunit UvrA Machinery gene
  HBA20_RS03600 (HBA20_03600) - 744437..745825 (+) 1389 WP_024917981.1 MFS transporter -
  HBA20_RS03605 (HBA20_03605) ssb 745842..746339 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  HBA20_RS03610 (HBA20_03610) - 746542..747681 (-) 1140 Protein_710 IS3 family transposase -
  HBA20_RS03615 (HBA20_03615) - 748019..748489 (+) 471 WP_033954565.1 hypothetical protein -
  HBA20_RS03620 (HBA20_03620) - 748638..749366 (-) 729 WP_124074719.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=377095 HBA20_RS03605 WP_003114685.1 745842..746339(+) (ssb) [Pseudomonas aeruginosa strain A5803]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=377095 HBA20_RS03605 WP_003114685.1 745842..746339(+) (ssb) [Pseudomonas aeruginosa strain A5803]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGATGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515

Multiple sequence alignment