Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | FRE64_RS06060 | Genome accession | NZ_CP042326 |
| Coordinates | 1283108..1283479 (-) | Length | 123 a.a. |
| NCBI ID | WP_146295130.1 | Uniprot ID | A0A5B8NN12 |
| Organism | Euhalothece natronophila Z-M001 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1278108..1288479
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FRE64_RS06045 (FRE64_06045) | - | 1279045..1279779 (-) | 735 | WP_246140419.1 | MlaE family lipid ABC transporter permease subunit | - |
| FRE64_RS06050 (FRE64_06050) | - | 1279841..1282432 (-) | 2592 | WP_146295128.1 | HAMP domain-containing methyl-accepting chemotaxis protein | - |
| FRE64_RS06055 (FRE64_06055) | - | 1282547..1283095 (-) | 549 | WP_146295129.1 | chemotaxis protein CheW | - |
| FRE64_RS06060 (FRE64_06060) | pilH | 1283108..1283479 (-) | 372 | WP_146295130.1 | response regulator transcription factor | Machinery gene |
| FRE64_RS06065 (FRE64_06065) | - | 1283578..1284771 (-) | 1194 | WP_146295131.1 | response regulator | - |
| FRE64_RS06070 (FRE64_06070) | trpC | 1285003..1285890 (+) | 888 | WP_146295132.1 | indole-3-glycerol phosphate synthase TrpC | - |
| FRE64_RS06075 (FRE64_06075) | - | 1285963..1286229 (+) | 267 | WP_146295133.1 | DUF5340 domain-containing protein | - |
| FRE64_RS06080 (FRE64_06080) | - | 1286411..1287565 (+) | 1155 | WP_146295134.1 | alanine--glyoxylate aminotransferase family protein | - |
| FRE64_RS06085 (FRE64_06085) | - | 1287690..1287866 (+) | 177 | WP_146295135.1 | 50S ribosomal protein L32 | - |
Sequence
Protein
Download Length: 123 a.a. Molecular weight: 13608.76 Da Isoelectric Point: 4.4820
>NTDB_id=377095 FRE64_RS06060 WP_146295130.1 1283108..1283479(-) (pilH) [Euhalothece natronophila Z-M001]
MTTVLVVEDSATQRQMISDLLKESGLNASVVSVADGVEALEQIKNKCPDIVVLDIVMPRMNGYEVCREIKTDPKTENLPV
IMCSSKGEEFDKYWGMKQGADAYIAKPFEPSELIGTIKQLLRG
MTTVLVVEDSATQRQMISDLLKESGLNASVVSVADGVEALEQIKNKCPDIVVLDIVMPRMNGYEVCREIKTDPKTENLPV
IMCSSKGEEFDKYWGMKQGADAYIAKPFEPSELIGTIKQLLRG
Nucleotide
Download Length: 372 bp
>NTDB_id=377095 FRE64_RS06060 WP_146295130.1 1283108..1283479(-) (pilH) [Euhalothece natronophila Z-M001]
ATGACTACAGTTTTAGTTGTTGAGGATAGCGCCACGCAAAGACAAATGATTTCTGATCTTCTTAAGGAGAGTGGCTTAAA
TGCTTCTGTGGTGAGTGTCGCTGACGGTGTAGAAGCATTAGAGCAAATCAAAAATAAATGCCCAGATATTGTGGTATTAG
ATATTGTCATGCCTCGGATGAACGGCTACGAAGTCTGTCGAGAAATCAAGACTGATCCTAAAACAGAAAATTTACCAGTT
ATTATGTGTTCCTCTAAAGGAGAGGAATTTGATAAATACTGGGGAATGAAGCAAGGAGCAGATGCTTATATTGCTAAGCC
GTTTGAACCCAGTGAACTCATTGGTACCATTAAACAATTACTGAGGGGATAA
ATGACTACAGTTTTAGTTGTTGAGGATAGCGCCACGCAAAGACAAATGATTTCTGATCTTCTTAAGGAGAGTGGCTTAAA
TGCTTCTGTGGTGAGTGTCGCTGACGGTGTAGAAGCATTAGAGCAAATCAAAAATAAATGCCCAGATATTGTGGTATTAG
ATATTGTCATGCCTCGGATGAACGGCTACGAAGTCTGTCGAGAAATCAAGACTGATCCTAAAACAGAAAATTTACCAGTT
ATTATGTGTTCCTCTAAAGGAGAGGAATTTGATAAATACTGGGGAATGAAGCAAGGAGCAGATGCTTATATTGCTAAGCC
GTTTGAACCCAGTGAACTCATTGGTACCATTAAACAATTACTGAGGGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
71.311 |
99.187 |
0.707 |
| micA | Streptococcus pneumoniae Cp1015 |
40.323 |
100 |
0.407 |
| pilG | Acinetobacter baumannii strain A118 |
43.103 |
94.309 |
0.406 |
| chpA | Acinetobacter baumannii strain A118 |
38.136 |
95.935 |
0.366 |