Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HMPREF4655_RS08210 | Genome accession | NC_017360 |
| Coordinates | 611172..612182 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664473.1 | Uniprot ID | - |
| Organism | Helicobacter pylori 35A | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 606172..617182
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF4655_RS03010 (HMPREF4655_20624) | - | 606265..606639 (-) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
| HMPREF4655_RS03015 (HMPREF4655_20625) | - | 606929..607531 (+) | 603 | WP_000291629.1 | outer membrane protein | - |
| HMPREF4655_RS03025 (HMPREF4655_20626) | - | 607663..608070 (-) | 408 | WP_000906129.1 | hypothetical protein | - |
| HMPREF4655_RS03030 (HMPREF4655_20627) | - | 608073..608315 (-) | 243 | WP_000944394.1 | PP0621 family protein | - |
| HMPREF4655_RS03035 (HMPREF4655_20628) | rsmG | 608309..608845 (-) | 537 | WP_001068814.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HMPREF4655_RS03040 (HMPREF4655_20629) | queA | 608842..609879 (-) | 1038 | WP_000657338.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HMPREF4655_RS03045 (HMPREF4655_20630) | tatC | 609880..610629 (-) | 750 | WP_000461233.1 | twin-arginine translocase subunit TatC | - |
| HMPREF4655_RS03050 (HMPREF4655_20631) | tatB | 610622..611104 (-) | 483 | WP_000467576.1 | Sec-independent protein translocase protein TatB | - |
| HMPREF4655_RS08210 (HMPREF4655_20632) | ruvB | 611172..612182 (-) | 1011 | WP_000664473.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HMPREF4655_RS08215 (HMPREF4655_20633) | panB | 612183..612995 (-) | 813 | WP_000062704.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HMPREF4655_RS03065 (HMPREF4655_20634) | - | 613144..613866 (+) | 723 | WP_000523341.1 | hypothetical protein | - |
| HMPREF4655_RS03070 (HMPREF4655_20635) | - | 613856..614710 (+) | 855 | WP_014534574.1 | outer membrane beta-barrel protein | - |
| HMPREF4655_RS03075 (HMPREF4655_20636) | - | 614719..615657 (+) | 939 | WP_000911227.1 | outer membrane protein | - |
| HMPREF4655_RS03080 (HMPREF4655_20637) | - | 615667..616989 (+) | 1323 | WP_000423103.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37281.23 Da Isoelectric Point: 6.0715
>NTDB_id=37693 HMPREF4655_RS08210 WP_000664473.1 611172..612182(-) (ruvB) [Helicobacter pylori 35A]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNSQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNSQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=37693 HMPREF4655_RS08210 WP_000664473.1 611172..612182(-) (ruvB) [Helicobacter pylori 35A]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGACGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTAG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGGATGCAATTTTATAGCCCTAGCGAATT
AGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATTACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCAGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGCAGAATCGCCACGCCCAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACTCTCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGACGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTAG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGGATGCAATTTTATAGCCCTAGCGAATT
AGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATTACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCAGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGCAGAATCGCCACGCCCAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACTCTCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
52.475 |
90.179 |
0.473 |