Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HBA50_RS00655 Genome accession   NZ_CP050133
Coordinates   129539..130129 (+) Length   196 a.a.
NCBI ID   WP_045500192.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 124539..135129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS00630 (HBA50_00630) - 125287..125757 (-) 471 WP_045500176.1 DUF3021 family protein -
  HBA50_RS00635 (HBA50_00635) brsR 125754..126194 (-) 441 WP_045500179.1 LytTR family DNA-binding domain-containing protein Regulator
  HBA50_RS00640 (HBA50_00640) hexB 126379..128322 (+) 1944 WP_045500183.1 DNA mismatch repair endonuclease MutL Machinery gene
  HBA50_RS00645 (HBA50_00645) - 128358..128879 (-) 522 WP_045500186.1 RDD family protein -
  HBA50_RS00650 (HBA50_00650) - 128863..129369 (-) 507 WP_045500189.1 helix-turn-helix domain-containing protein -
  HBA50_RS00655 (HBA50_00655) ruvA 129539..130129 (+) 591 WP_045500192.1 Holliday junction branch migration protein RuvA Machinery gene
  HBA50_RS00660 (HBA50_00660) - 130139..130693 (+) 555 WP_045500195.1 DNA-3-methyladenine glycosylase I -
  HBA50_RS00665 (HBA50_00665) - 130698..131351 (+) 654 WP_045500198.1 CPBP family intramembrane glutamic endopeptidase -
  HBA50_RS00670 (HBA50_00670) - 131435..131992 (+) 558 WP_045500201.1 GNAT family N-acetyltransferase -
  HBA50_RS00675 (HBA50_00675) - 132036..132446 (-) 411 WP_045500205.1 helix-turn-helix domain-containing protein -
  HBA50_RS00680 (HBA50_00680) - 132717..133974 (+) 1258 Protein_132 competence/damage-inducible protein A -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21616.04 Da        Isoelectric Point: 5.8335

>NTDB_id=376857 HBA50_RS00655 WP_045500192.1 129539..130129(+) (ruvA) [Streptococcus cristatus ATCC 51100]
MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSSLVNQETQIYVHQVVREDAQLLYGFRSEEEKQLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVAADGPAASKAPVQTVDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=376857 HBA50_RS00655 WP_045500192.1 129539..130129(+) (ruvA) [Streptococcus cristatus ATCC 51100]
ATGTACGAATATTTTAAAGGAATCATCAGTAAAATCACAGCCAAGTACATTGTATTGGAAGTCAACTCGATCGGCTATAT
TCTTCATGTGGCCAATCCTTATGCATACTCAAGTCTAGTCAATCAAGAAACGCAAATTTATGTGCATCAGGTTGTCCGTG
AGGATGCGCAGCTGCTTTATGGCTTTCGCTCAGAAGAGGAGAAGCAACTATTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGGCCAGTGTCTGCCCTGGCTATTATTGCGGCTGATGATAATGCTGGCTTGGTACAAGCTATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGTTGGACTTAGAAGGCAAGGTAGTGGCGG
CGGATGGACCGGCAGCAAGCAAGGCGCCCGTCCAGACTGTGGATAATCAGGAGCTGGAAGAAGCCATGGAAGCCATGTTG
GCATTGGGCTACAAAGCTGCTGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACGGATACAGCTGAAAACTATAT
CAAGTCTGCTCTCAAGATGTTAGTGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

87.31

100

0.878
  ruvA Streptococcus pneumoniae D39

87.31

100

0.878
  ruvA Streptococcus pneumoniae TIGR4

86.802

100

0.872
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.952

100

0.439