Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HAV35_RS16325 Genome accession   NZ_CP050120
Coordinates   1091691..1091888 (-) Length   65 a.a.
NCBI ID   WP_341765363.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain BND-54     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1086691..1096888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV35_RS05630 (HAV35_05635) - 1087384..1089441 (+) 2058 WP_010888294.1 M3 family metallopeptidase -
  HAV35_RS05635 (HAV35_05640) - 1089483..1090538 (-) 1056 WP_028328021.1 hypothetical protein -
  HAV35_RS05640 (HAV35_05645) - 1090655..1091686 (-) 1032 WP_010888292.1 hypothetical protein -
  HAV35_RS16325 comM 1091691..1091888 (-) 198 WP_341765363.1 hypothetical protein Machinery gene
  HAV35_RS16330 - 1092065..1092319 (-) 255 Protein_1116 ATP-binding protein -
  HAV35_RS16335 comM 1092217..1093188 (-) 972 WP_243759774.1 magnesium chelatase domain-containing protein Machinery gene
  HAV35_RS05650 (HAV35_05655) - 1093263..1094237 (-) 975 WP_027479894.1 ABC transporter substrate-binding protein -
  HAV35_RS05655 (HAV35_05660) - 1094340..1094879 (-) 540 WP_227085933.1 hypothetical protein -
  HAV35_RS05660 (HAV35_05665) - 1094995..1096602 (-) 1608 WP_010888288.1 TRAP transporter fused permease subunit -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 6997.96 Da        Isoelectric Point: 8.6820

>NTDB_id=376846 HAV35_RS16325 WP_341765363.1 1091691..1091888(-) (comM) [Deinococcus radiodurans strain BND-54]
MREHAPLAAGPLAFAQAAARQLGLTGRGYDRVLRVARTVADLAGSDEIREAHLAEAVTYRPRELA

Nucleotide


Download         Length: 198 bp        

>NTDB_id=376846 HAV35_RS16325 WP_341765363.1 1091691..1091888(-) (comM) [Deinococcus radiodurans strain BND-54]
CTGCGCGAACATGCGCCGCTGGCCGCCGGGCCGCTCGCCTTCGCGCAGGCCGCCGCCCGGCAACTGGGCCTCACCGGGCG
CGGCTACGACCGGGTGCTGCGGGTGGCGCGCACGGTGGCCGACCTCGCGGGCAGTGACGAGATTCGGGAAGCACACCTTG
CCGAAGCGGTGACGTACCGGCCACGGGAACTGGCGTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(2-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

48.214

86.154

0.415
  comM Vibrio cholerae O1 biovar El Tor strain E7946

43.333

92.308

0.4
  comM Vibrio cholerae strain A1552

43.333

92.308

0.4
  comM Glaesserella parasuis strain SC1401

53.191

72.308

0.385
  comM Haemophilus influenzae Rd KW20

51.064

72.308

0.369
  comM Acinetobacter baylyi ADP1

55.814

66.154

0.369