Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOLE_RS00980 Genome accession   NC_014259
Coordinates   219963..220553 (+) Length   196 a.a.
NCBI ID   WP_013196624.1    Uniprot ID   A0AAN0P5A0
Organism   Acinetobacter oleivorans DR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 214963..225553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOLE_RS00955 (AOLE_00935) - 215033..215839 (-) 807 WP_013196620.1 SDR family oxidoreductase -
  AOLE_RS00960 (AOLE_00940) - 215943..216314 (-) 372 WP_013196621.1 MerR family transcriptional regulator -
  AOLE_RS00965 (AOLE_00945) tenA 216380..217054 (-) 675 WP_013196622.1 thiaminase II -
  AOLE_RS00970 (AOLE_00950) - 217317..218399 (+) 1083 WP_005300706.1 DUF475 domain-containing protein -
  AOLE_RS00975 (AOLE_00955) - 218547..219911 (+) 1365 WP_005300707.1 MFS transporter -
  AOLE_RS00980 (AOLE_00960) ssb 219963..220553 (+) 591 WP_013196624.1 single-stranded DNA-binding protein Machinery gene
  AOLE_RS00985 (AOLE_00965) - 220595..220918 (-) 324 WP_004789977.1 AzlD domain-containing protein -
  AOLE_RS00990 (AOLE_00970) - 220915..221610 (-) 696 WP_023274361.1 AzlC family ABC transporter permease -
  AOLE_RS00995 (AOLE_00975) - 221679..222227 (+) 549 WP_004789974.1 helix-turn-helix domain-containing protein -
  AOLE_RS01000 (AOLE_00980) - 222554..223996 (+) 1443 WP_013196626.1 amino acid permease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21239.01 Da        Isoelectric Point: 6.4832

>NTDB_id=37668 AOLE_RS00980 WP_013196624.1 219963..220553(+) (ssb) [Acinetobacter oleivorans DR1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDGRQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNNGGGYGGQ
GGFGNGGNSPQGSGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=37668 AOLE_RS00980 WP_013196624.1 219963..220553(+) (ssb) [Acinetobacter oleivorans DR1]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GCTGACTCAATTTTCAATCGCAACAAGTGAAGCTTGGACCGATAAAACTTCAGGTGAGCGTAAAGAACAAACTGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCCTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGCACGCGTCAGTGGACTGATCAAAATGGTCAAGAGCGCTATACAACAGAAATTCGTGGCGAACAGATGCAAAT
GTTAGATGGTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGCCAAAACAATGGCGGTGGTTATGGTGGCCAA
GGTGGTTTCGGTAATGGTGGTAACAGCCCACAAGGTAGTGGTTTCGCTCCTAAAGCGCCACAACAACCTGCGTCTGCACC
AGCTGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.971

100

0.536
  ssb Vibrio cholerae strain A1552

44.118

100

0.459
  ssb Neisseria meningitidis MC58

38.191

100

0.388
  ssb Neisseria gonorrhoeae MS11

37.688

100

0.383

Multiple sequence alignment