Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   FPV14_RS08415 Genome accession   NZ_CP042286
Coordinates   1785943..1786398 (-) Length   151 a.a.
NCBI ID   WP_000698658.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain B3-25B     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1780943..1791398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPV14_RS08390 (FPV14_08390) gcvPB 1781106..1782578 (-) 1473 WP_031787254.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  FPV14_RS08395 (FPV14_08395) gcvPA 1782571..1783917 (-) 1347 WP_047556499.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  FPV14_RS08400 (FPV14_08400) gcvT 1783936..1785027 (-) 1092 WP_000093342.1 glycine cleavage system aminomethyltransferase GcvT -
  FPV14_RS08405 (FPV14_08405) - 1785184..1785708 (-) 525 WP_047556497.1 shikimate kinase -
  FPV14_RS08410 (FPV14_08410) - 1785695..1785844 (-) 150 WP_072324192.1 hypothetical protein -
  FPV14_RS08415 (FPV14_08415) comGF 1785943..1786398 (-) 456 WP_000698658.1 competence type IV pilus minor pilin ComGF Machinery gene
  FPV14_RS08420 (FPV14_08420) comGE 1786358..1786657 (-) 300 WP_000800819.1 hypothetical protein Machinery gene
  FPV14_RS08425 (FPV14_08425) comGD 1786644..1787090 (-) 447 WP_072467207.1 competence type IV pilus minor pilin ComGD Machinery gene
  FPV14_RS08430 (FPV14_08430) comGC 1787068..1787379 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  FPV14_RS08435 (FPV14_08435) comGB 1787394..1788464 (-) 1071 WP_047556495.1 competence type IV pilus assembly protein ComGB Machinery gene
  FPV14_RS08440 (FPV14_08440) comGA 1788436..1789410 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  FPV14_RS08445 (FPV14_08445) - 1789462..1790085 (-) 624 WP_001222932.1 MBL fold metallo-hydrolase -
  FPV14_RS08450 (FPV14_08450) - 1790082..1790411 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  FPV14_RS08455 (FPV14_08455) - 1790411..1791397 (-) 987 WP_047556493.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 17500.87 Da        Isoelectric Point: 10.3337

>NTDB_id=376623 FPV14_RS08415 WP_000698658.1 1785943..1786398(-) (comGF) [Staphylococcus argenteus strain B3-25B]
MKILQNLKNVFNIKVKAFSLIEMILAMMAISIILLIVPDTIKISKTFLNESKDLTSVDFEFFARDLIDDFKKIDKKQIEI
KPHNILINKTNEQIEYKFLNNKIIKTVNDKGNITMLNNVLSFSINKDQNATLRISISLKEGELIRKKILFV

Nucleotide


Download         Length: 456 bp        

>NTDB_id=376623 FPV14_RS08415 WP_000698658.1 1785943..1786398(-) (comGF) [Staphylococcus argenteus strain B3-25B]
ATGAAAATTCTTCAAAATTTAAAGAATGTATTCAATATTAAAGTTAAGGCTTTTTCGTTAATTGAAATGATATTAGCAAT
GATGGCTATAAGTATTATTTTGCTAATTGTACCTGACACGATAAAAATAAGTAAGACGTTTTTAAATGAGAGCAAAGATT
TAACGAGTGTTGATTTTGAATTCTTTGCAAGAGACTTAATTGATGATTTTAAAAAAATAGATAAAAAACAAATTGAAATC
AAACCTCATAATATCCTTATCAATAAAACAAACGAGCAAATTGAGTATAAATTTTTGAATAATAAAATTATCAAAACAGT
TAATGATAAGGGGAATATAACGATGTTAAATAATGTTCTGTCTTTTTCAATTAATAAAGATCAAAATGCTACTTTGCGAA
TATCAATATCATTAAAAGAAGGTGAATTAATACGCAAGAAAATATTATTTGTTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(48-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

57.639

95.364

0.55
  comGF Staphylococcus aureus N315

56.944

95.364

0.543

Multiple sequence alignment