Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   FPV14_RS08435 Genome accession   NZ_CP042286
Coordinates   1787394..1788464 (-) Length   356 a.a.
NCBI ID   WP_047556495.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain B3-25B     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1782394..1793464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPV14_RS08395 (FPV14_08395) gcvPA 1782571..1783917 (-) 1347 WP_047556499.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  FPV14_RS08400 (FPV14_08400) gcvT 1783936..1785027 (-) 1092 WP_000093342.1 glycine cleavage system aminomethyltransferase GcvT -
  FPV14_RS08405 (FPV14_08405) - 1785184..1785708 (-) 525 WP_047556497.1 shikimate kinase -
  FPV14_RS08410 (FPV14_08410) - 1785695..1785844 (-) 150 WP_072324192.1 hypothetical protein -
  FPV14_RS08415 (FPV14_08415) comGF 1785943..1786398 (-) 456 WP_000698658.1 competence type IV pilus minor pilin ComGF Machinery gene
  FPV14_RS08420 (FPV14_08420) comGE 1786358..1786657 (-) 300 WP_000800819.1 hypothetical protein Machinery gene
  FPV14_RS08425 (FPV14_08425) comGD 1786644..1787090 (-) 447 WP_072467207.1 competence type IV pilus minor pilin ComGD Machinery gene
  FPV14_RS08430 (FPV14_08430) comGC 1787068..1787379 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  FPV14_RS08435 (FPV14_08435) comGB 1787394..1788464 (-) 1071 WP_047556495.1 competence type IV pilus assembly protein ComGB Machinery gene
  FPV14_RS08440 (FPV14_08440) comGA 1788436..1789410 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  FPV14_RS08445 (FPV14_08445) - 1789462..1790085 (-) 624 WP_001222932.1 MBL fold metallo-hydrolase -
  FPV14_RS08450 (FPV14_08450) - 1790082..1790411 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  FPV14_RS08455 (FPV14_08455) - 1790411..1791397 (-) 987 WP_047556493.1 ROK family glucokinase -
  FPV14_RS08460 (FPV14_08460) - 1791397..1791597 (-) 201 WP_000087563.1 YqgQ family protein -
  FPV14_RS08465 (FPV14_08465) - 1791578..1793041 (-) 1464 WP_031787264.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41717.16 Da        Isoelectric Point: 10.1992

>NTDB_id=376627 FPV14_RS08435 WP_047556495.1 1787394..1788464(-) (comGB) [Staphylococcus argenteus strain B3-25B]
MKVQWISIFKKYSKKRQLNKAQQIELIVNLKNLLQYGFTLYQSFQFLNLQIKYKDKELSSKILSEISNGASCSKILAMLG
YSDTIVMQIYLAERFGNIVDILDETVKFMKINRKSEQRLLKTLQYPLVLVSVFIGMIMMLNITVIPQFQQLYTSMNIKLS
TFQKALSFFISSLPSLILITIFLILILTTSIKLIYNRLTMLYKINFMMKIPILSSYYKLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGEYLLTYSEKGHGLPEILSNLKCFKPQLIKFIQQGEKRGKLEVELRLYSQILVKQIEDKAIR
QTQFIQPILFLILGLFIVAIYLVIMLPMFQMMQIIN

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=376627 FPV14_RS08435 WP_047556495.1 1787394..1788464(-) (comGB) [Staphylococcus argenteus strain B3-25B]
GTGAAAGTACAATGGATAAGTATATTTAAAAAATATTCTAAGAAACGACAATTAAACAAAGCACAACAAATAGAGCTAAT
TGTAAATTTAAAGAATTTACTACAATATGGGTTCACATTATATCAAAGCTTTCAGTTTCTAAACCTTCAAATTAAATATA
AAGATAAAGAACTATCGTCAAAAATTCTTAGCGAAATTTCAAATGGTGCATCGTGTAGCAAAATACTAGCCATGTTAGGC
TATAGTGATACTATAGTAATGCAAATTTACTTAGCAGAAAGGTTTGGTAATATTGTAGATATCTTAGATGAAACAGTGAA
ATTTATGAAAATAAATAGAAAATCCGAGCAAAGATTATTAAAAACTTTGCAATATCCCTTAGTGTTAGTTTCAGTATTTA
TAGGAATGATTATGATGTTGAATATCACTGTTATTCCACAATTCCAACAACTATATACTTCAATGAATATTAAATTATCA
ACATTTCAAAAAGCACTTTCCTTTTTTATCTCAAGTTTACCCTCATTAATTTTAATAACAATTTTTCTTATTTTAATTTT
AACCACCTCAATAAAATTAATTTATAACAGGCTAACGATGTTATATAAAATCAACTTTATGATGAAGATACCAATTTTAT
CCAGTTATTATAAGTTGTTCAAAACATATTTTGTTACAAATGAATTAGTTTTATTCTATAAAAATGGTATTACACTTCAA
TCTATCGTTGATGTTTATATCAATCATAGTAGTGATCCATTCAGACAATTTTTAGGTGAATATTTATTAACATATTCAGA
AAAAGGACATGGGTTACCAGAAATTTTATCAAATTTAAAGTGCTTTAAACCACAATTGATAAAGTTTATACAGCAAGGTG
AAAAAAGAGGGAAATTAGAAGTTGAGCTTAGATTATACTCTCAAATTTTAGTGAAACAAATTGAAGATAAAGCGATTCGT
CAAACTCAATTTATACAACCAATTTTATTTTTAATCTTAGGGCTTTTTATTGTTGCAATTTATTTGGTAATAATGCTACC
AATGTTCCAAATGATGCAAATTATTAATTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(32-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

78.028

99.719

0.778
  comGB Staphylococcus aureus N315

78.028

99.719

0.778

Multiple sequence alignment