Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   HAP36_RS17740 Genome accession   NZ_CP050053
Coordinates   3845619..3846233 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain LIUYANG-C     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3840619..3851233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAP36_RS17720 - 3842048..3842677 (+) 630 WP_003091190.1 CsiV family protein -
  HAP36_RS17725 - 3842723..3843460 (-) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  HAP36_RS17730 nagZ 3843472..3844470 (-) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  HAP36_RS17735 psrA 3844686..3845387 (-) 702 WP_003091195.1 transcriptional regulator PsrA -
  HAP36_RS17740 dinR/lexA 3845619..3846233 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  HAP36_RS17745 sulA 3846245..3846730 (+) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  HAP36_RS17750 - 3846752..3846985 (-) 234 WP_003109483.1 hypothetical protein -
  HAP36_RS17755 - 3847191..3847709 (-) 519 WP_003113979.1 DUF6586 family protein -
  HAP36_RS17760 topA 3847816..3850422 (-) 2607 WP_003091201.1 type I DNA topoisomerase -
  HAP36_RS17765 - 3850513..3850776 (-) 264 WP_003109484.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=376608 HAP36_RS17740 WP_003091196.1 3845619..3846233(+) (dinR/lexA) [Pseudomonas aeruginosa strain LIUYANG-C]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=376608 HAP36_RS17740 WP_003091196.1 3845619..3846233(+) (dinR/lexA) [Pseudomonas aeruginosa strain LIUYANG-C]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGTATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387

Multiple sequence alignment