Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FPV14_RS02665 Genome accession   NZ_CP042286
Coordinates   597282..597785 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus argenteus strain B3-25B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 592282..602785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPV14_RS02635 (FPV14_02635) - 593230..594075 (+) 846 WP_047555561.1 ParB/RepB/Spo0J family partition protein -
  FPV14_RS02640 (FPV14_02640) - 594221..595102 (+) 882 WP_000373078.1 mechanosensitive ion channel family protein -
  FPV14_RS02645 (FPV14_02645) - 595132..595335 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  FPV14_RS02650 (FPV14_02650) ychF 595347..596444 (+) 1098 WP_001218728.1 redox-regulated ATPase YchF -
  FPV14_RS02655 (FPV14_02655) - 596530..596721 (-) 192 WP_001046951.1 hypothetical protein -
  FPV14_RS02660 (FPV14_02660) rpsF 596965..597261 (+) 297 WP_001261459.1 30S ribosomal protein S6 -
  FPV14_RS02665 (FPV14_02665) ssbA 597282..597785 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  FPV14_RS02670 (FPV14_02670) rpsR 597837..598079 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  FPV14_RS02675 (FPV14_02675) - 598344..599282 (-) 939 WP_072467281.1 Abi family protein -
  FPV14_RS02680 (FPV14_02680) - 599321..599733 (-) 413 Protein_530 tyrosine-type recombinase/integrase -
  FPV14_RS02690 (FPV14_02690) - 600065..601264 (-) 1200 WP_281122398.1 IS110 family transposase -
  FPV14_RS02695 (FPV14_02695) - 601740..602351 (+) 612 WP_047557817.1 exotoxin beta-grasp domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=376608 FPV14_RS02665 WP_000934799.1 597282..597785(+) (ssbA) [Staphylococcus argenteus strain B3-25B]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=376608 FPV14_RS02665 WP_000934799.1 597282..597785(+) (ssbA) [Staphylococcus argenteus strain B3-25B]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACATTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTATAATAACTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment