Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FQU71_RS04110 Genome accession   NZ_CP042254
Coordinates   738776..739249 (-) Length   157 a.a.
NCBI ID   WP_003633038.1    Uniprot ID   D3HPN2
Organism   Legionella longbeachae strain B3526CHC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 733776..744249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQU71_RS04070 (FQU71_04070) rpmJ 734156..734269 (+) 114 WP_012978806.1 50S ribosomal protein L36 -
  FQU71_RS04075 (FQU71_04075) rpsM 734349..734705 (+) 357 WP_003633056.1 30S ribosomal protein S13 -
  FQU71_RS04080 (FQU71_04080) rpsK 734727..735125 (+) 399 WP_003633055.1 30S ribosomal protein S11 -
  FQU71_RS04085 (FQU71_04085) rpsD 735142..735762 (+) 621 WP_003633050.1 30S ribosomal protein S4 -
  FQU71_RS04090 (FQU71_04090) - 735781..736773 (+) 993 WP_003633048.1 DNA-directed RNA polymerase subunit alpha -
  FQU71_RS04095 (FQU71_04095) rplQ 736791..737174 (+) 384 WP_003633046.1 50S ribosomal protein L17 -
  FQU71_RS04100 (FQU71_04100) - 737264..737446 (+) 183 WP_150865605.1 hypothetical protein -
  FQU71_RS04105 (FQU71_04105) - 737904..738164 (-) 261 WP_150865608.1 transposase -
  FQU71_RS04110 (FQU71_04110) ssb 738776..739249 (-) 474 WP_003633038.1 single-stranded DNA-binding protein Machinery gene
  FQU71_RS19905 - 739507..739626 (+) 120 Protein_651 MerR family DNA-binding transcriptional regulator -
  FQU71_RS04115 (FQU71_04115) queF 739867..740724 (+) 858 WP_225316891.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  FQU71_RS04120 (FQU71_04120) - 740907..742004 (+) 1098 WP_225316809.1 hypothetical protein -
  FQU71_RS04125 (FQU71_04125) - 742024..742644 (+) 621 WP_150865617.1 hypothetical protein -
  FQU71_RS04130 (FQU71_04130) - 742616..743983 (-) 1368 WP_150865620.1 MFS transporter -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17580.51 Da        Isoelectric Point: 4.9833

>NTDB_id=376321 FQU71_RS04110 WP_003633038.1 738776..739249(-) (ssb) [Legionella longbeachae strain B3526CHC]
MARGINKVILIGNVGVDPDVRYLPNGNAVTTLSIATSEAWKDKATGEKQERTEWHRVVCFNRLGEIAGEYVRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVANDIQMLDSKGGASSSFDDIPQGQFAPSNQNFTKKQPTQQVPQDAFDQLDDDVPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=376321 FQU71_RS04110 WP_003633038.1 738776..739249(-) (ssb) [Legionella longbeachae strain B3526CHC]
ATGGCACGTGGAATAAACAAAGTGATACTCATTGGTAACGTAGGTGTTGATCCTGACGTACGATATTTACCTAATGGCAA
TGCAGTAACTACACTCTCAATCGCTACCAGTGAAGCATGGAAGGATAAGGCTACTGGTGAAAAACAAGAAAGAACCGAAT
GGCATCGGGTGGTTTGTTTTAATCGTTTAGGGGAAATTGCTGGCGAATATGTGCGCAAAGGATCAAAACTTTATGTCGAA
GGAAGCTTAAGAACCAGAAAATGGCAAGATCAACAAGGACAAGATAGATATACTACGGAGATTGTTGCCAACGACATACA
AATGTTAGATAGCAAAGGAGGAGCATCATCAAGTTTTGATGATATCCCACAAGGCCAATTTGCACCAAGCAACCAAAACT
TTACAAAAAAACAACCTACCCAACAAGTCCCACAAGATGCTTTTGATCAATTAGATGATGATGTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HPN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.247

100

0.592
  ssb Vibrio cholerae strain A1552

49.143

100

0.548
  ssb Neisseria meningitidis MC58

42.197

100

0.465
  ssb Neisseria gonorrhoeae MS11

42.197

100

0.465

Multiple sequence alignment