Detailed information NTG0037615

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: HPCU_RS08345
• Genome accession: NC_017358
• Coordinates: 451550..452566 (-)
• Length: 338 a.a.
• NCBI ID: WP_000664509.1
• Uniprot ID: -
• Organism: Helicobacter pylori Cuz20
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 446550..457566

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPCU_RS02190 (HPCU_02255)	queA	446712..447749 (-)	1038	WP_000657327.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
HPCU_RS02195 (HPCU_02260)	tatC	447750..448535 (-)	786	WP_000461251.1	twin-arginine translocase subunit TatC	-
HPCU_RS02200 (HPCU_02265)	tatB	448528..449010 (-)	483	WP_000467596.1	Sec-independent protein translocase protein TatB	-
HPCU_RS02205 (HPCU_02270)	-	449278..451392 (-)	2115	WP_000958896.1	DNA cytosine methyltransferase	-
HPCU_RS08345 (HPCU_02275)	ruvB	451550..452566 (-)	1017	WP_000664509.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
HPCU_RS08350 (HPCU_02280)	panB	452567..453379 (-)	813	WP_000062661.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
HPCU_RS02220 (HPCU_02285)	-	453527..454249 (+)	723	WP_000523341.1	hypothetical protein	-
HPCU_RS02225 (HPCU_02290)	-	454239..455093 (+)	855	WP_014534209.1	outer membrane beta-barrel protein	-
HPCU_RS02230 (HPCU_02295)	-	455105..456046 (+)	942	WP_000669907.1	outer membrane beta-barrel protein	-
HPCU_RS02235 (HPCU_02300)	-	456056..457378 (+)	1323	WP_000423089.1	M23 family metallopeptidase	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 37407.39 Da
• Isoelectric Point: 6.0715

>NTDB_id=37615 HPCU_RS08345 WP_000664509.1 451550..452566(-) (ruvB) [Helicobacter pylori Cuz20]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTTTPTPASLF

Nucleotide

• Length: 1017 bp

>NTDB_id=37615 HPCU_RS08345 WP_000664509.1 451550..452566(-) (ruvB) [Helicobacter pylori Cuz20]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAGTTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCTGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCCAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGATTGG
ATATTATCATAGGTTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACTCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGGGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGTTAAACTCAACCAAGACATCAAAGAAGAAAGTGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATTGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCTACAACCACCCCTACTCCAGCAAGTCTATTTTAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	97.289	98.225	0.956
ruvB	Bacillus subtilis subsp. subtilis str. 168	53.87	95.562	0.515
ruvB	Synechocystis sp. PCC 6803	51.25	94.675	0.485
ruvB	Streptococcus pneumoniae TIGR4	50.155	95.562	0.479
ruvB	Streptococcus pneumoniae R6	50.155	95.562	0.479
ruvB	Streptococcus pneumoniae D39	50.155	95.562	0.479