Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FPZ54_RS15600 Genome accession   NZ_CP042239
Coordinates   3284267..3284812 (-) Length   181 a.a.
NCBI ID   WP_145848709.1    Uniprot ID   A0A518RII3
Organism   Sphingomonas suaedae strain XS-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3279267..3289812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPZ54_RS15580 (FPZ54_15580) - 3279819..3281177 (-) 1359 WP_145848704.1 MATE family efflux transporter -
  FPZ54_RS15590 (FPZ54_15590) - 3281813..3282442 (-) 630 WP_239019826.1 PilZ domain-containing protein -
  FPZ54_RS15595 (FPZ54_15595) - 3282669..3284171 (+) 1503 WP_145848708.1 tryptophan halogenase family protein -
  FPZ54_RS15600 (FPZ54_15600) ssb 3284267..3284812 (-) 546 WP_145848709.1 single-stranded DNA-binding protein Machinery gene
  FPZ54_RS15605 (FPZ54_15605) - 3284848..3285021 (+) 174 WP_145848710.1 DUF4169 family protein -
  FPZ54_RS15610 (FPZ54_15610) - 3285412..3285681 (-) 270 WP_145848711.1 hypothetical protein -
  FPZ54_RS15615 (FPZ54_15615) smc 3285766..3289179 (-) 3414 WP_145848712.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18850.40 Da        Isoelectric Point: 5.0492

>NTDB_id=376116 FPZ54_RS15600 WP_145848709.1 3284267..3284812(-) (ssb) [Sphingomonas suaedae strain XS-10]
MAGSVNKVILVGNLGRDPESRSFSNGGKVVELRVATSESWKDRNSGERKERTEWHTVKLFSEGLANVAERYLRKGSKVYL
EGQLQTRKWQDQQGNDRYSTEIVLQGFDAKLVMLDGPGGGQGGGGGGGSRGADDWGGGDDAFAGQSSNRGGGGGYGGGAS
RGGGSSSGGGFPDDLDDDVPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=376116 FPZ54_RS15600 WP_145848709.1 3284267..3284812(-) (ssb) [Sphingomonas suaedae strain XS-10]
ATGGCGGGCAGCGTCAACAAGGTCATCCTGGTCGGCAATCTCGGGCGCGATCCCGAAAGCCGGTCCTTTTCCAACGGCGG
CAAGGTGGTCGAACTGCGCGTCGCCACCTCGGAAAGCTGGAAGGACCGCAATTCGGGCGAGCGCAAGGAGCGCACCGAAT
GGCACACGGTCAAGCTCTTTTCCGAGGGACTTGCCAATGTCGCCGAACGCTATCTGCGCAAAGGCTCGAAAGTCTATCTC
GAAGGCCAGCTCCAGACCCGCAAATGGCAGGACCAGCAGGGCAATGACCGCTATTCAACCGAGATCGTGCTGCAGGGCTT
CGATGCCAAGCTGGTGATGCTCGACGGTCCCGGCGGCGGTCAGGGCGGCGGTGGCGGGGGCGGCAGCCGGGGTGCCGACG
ACTGGGGCGGCGGCGATGACGCATTTGCCGGCCAGTCGAGCAATCGTGGCGGCGGGGGCGGCTATGGCGGCGGCGCCAGC
CGCGGCGGTGGCAGCAGCTCGGGCGGCGGCTTTCCCGACGATCTCGACGACGACGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A518RII3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.497
  ssb Vibrio cholerae strain A1552

46.328

97.79

0.453
  ssb Neisseria meningitidis MC58

40

100

0.409
  ssb Neisseria gonorrhoeae MS11

38.919

100

0.398

Multiple sequence alignment