Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Dpoa569_RS06320 Genome accession   NZ_CP042220
Coordinates   1468274..1468873 (-) Length   199 a.a.
NCBI ID   WP_146411166.1    Uniprot ID   A0A5B8HJL0
Organism   Dickeya poaceiphila strain NCPPB 569     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1463274..1473873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Dpoa569_RS06285 (Dpoa569_0001272) - 1463441..1463776 (-) 336 WP_227983139.1 hypothetical protein -
  Dpoa569_RS19505 - 1463773..1464630 (-) 858 WP_201765198.1 hypothetical protein -
  Dpoa569_RS06295 (Dpoa569_0001274) - 1464620..1465573 (-) 954 WP_042871580.1 Lar family restriction alleviation protein -
  Dpoa569_RS06300 (Dpoa569_0001276) - 1465916..1466899 (-) 984 WP_050569474.1 hypothetical protein -
  Dpoa569_RS19425 (Dpoa569_0001277) - 1466886..1467077 (-) 192 WP_071604323.1 hypothetical protein -
  Dpoa569_RS06305 (Dpoa569_0001278) - 1467070..1467258 (-) 189 WP_042871577.1 ANR family transcriptional regulator -
  Dpoa569_RS06310 (Dpoa569_0001279) - 1467272..1467502 (-) 231 WP_042871575.1 hypothetical protein -
  Dpoa569_RS06315 (Dpoa569_0001280) - 1467572..1468147 (-) 576 WP_042873993.1 3'-5' exonuclease -
  Dpoa569_RS06320 (Dpoa569_0001281) ssb 1468274..1468873 (-) 600 WP_146411166.1 single-stranded DNA-binding protein Machinery gene
  Dpoa569_RS06325 (Dpoa569_0001282) - 1468874..1469737 (-) 864 WP_042871571.1 ATP-binding protein -
  Dpoa569_RS06330 (Dpoa569_0001283) - 1469748..1469942 (-) 195 WP_128569750.1 hypothetical protein -
  Dpoa569_RS06335 (Dpoa569_0001284) - 1469939..1470130 (-) 192 WP_042871568.1 hypothetical protein -
  Dpoa569_RS06340 (Dpoa569_0001285) - 1470218..1470484 (-) 267 WP_042871566.1 hypothetical protein -
  Dpoa569_RS06345 (Dpoa569_0001286) - 1470554..1470835 (-) 282 WP_042871564.1 hypothetical protein -
  Dpoa569_RS06355 (Dpoa569_0001287) - 1471448..1471714 (-) 267 WP_128569749.1 transcriptional regulator -
  Dpoa569_RS06360 (Dpoa569_0001288) - 1472005..1472946 (-) 942 WP_042871560.1 hypothetical protein -
  Dpoa569_RS06365 (Dpoa569_0001289) - 1473029..1473742 (-) 714 WP_042873991.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21308.60 Da        Isoelectric Point: 6.7301

>NTDB_id=376096 Dpoa569_RS06320 WP_146411166.1 1468274..1468873(-) (ssb) [Dickeya poaceiphila strain NCPPB 569]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRIALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYTTEVVVDISGSMQMLGGRAGGGAPAGGGIGGNMGGGNAPQGGWGQPQQPQQANQFSGGGQSQ
SRPQQSSPMPGNEPPMDFDDDIPFAPIGLQFNKHSIHSI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=376096 Dpoa569_RS06320 WP_146411166.1 1468274..1468873(-) (ssb) [Dickeya poaceiphila strain NCPPB 569]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTATCGGCAATCTGGGTCAAGACCCGGAAGTTCGCTACATGCCGAACGG
CGGTGCGGTCGCCAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGCACCG
AGTGGCACCGCATTGCCCTTTACGGCAAGCTGGCGGAAATCGCTGGTGAGTACCTTCGCAAAGGCTCTCAGGTGTATATC
GAAGGCCAGTTGCGCACCCGCAAATGGCAGGATCAGAGCGGTCAGGATCGCTACACCACCGAAGTGGTGGTCGATATCTC
CGGTAGTATGCAGATGCTGGGTGGCCGCGCAGGCGGCGGTGCACCAGCCGGTGGCGGCATAGGCGGTAATATGGGTGGTG
GTAACGCGCCACAAGGCGGTTGGGGTCAGCCACAACAACCGCAGCAAGCCAACCAGTTCAGCGGCGGTGGTCAGTCCCAG
TCCCGTCCGCAGCAAAGCTCGCCGATGCCAGGCAACGAACCGCCGATGGATTTTGACGACGATATTCCTTTCGCGCCTAT
CGGATTGCAATTTAATAAACATTCCATTCACTCAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8HJL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.404

94.472

0.693
  ssb Glaesserella parasuis strain SC1401

55.026

94.975

0.523
  ssb Neisseria meningitidis MC58

45.902

91.96

0.422
  ssb Neisseria gonorrhoeae MS11

45.902

91.96

0.422

Multiple sequence alignment