Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Dpoa569_RS03385 | Genome accession | NZ_CP042220 |
| Coordinates | 761668..762222 (-) | Length | 184 a.a. |
| NCBI ID | WP_042872689.1 | Uniprot ID | A0A5B8I2H5 |
| Organism | Dickeya poaceiphila strain NCPPB 569 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 756668..767222
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Dpoa569_RS03365 (Dpoa569_0000677) | - | 757591..758592 (+) | 1002 | WP_042874073.1 | carbohydrate ABC transporter permease | - |
| Dpoa569_RS03370 (Dpoa569_0000678) | - | 758605..759657 (+) | 1053 | WP_042872694.1 | carbohydrate ABC transporter permease | - |
| Dpoa569_RS03375 (Dpoa569_0000679) | - | 759658..760698 (+) | 1041 | WP_042872693.1 | LacI family DNA-binding transcriptional regulator | - |
| Dpoa569_RS03380 (Dpoa569_0000680) | - | 760762..761325 (+) | 564 | WP_042872691.1 | hypothetical protein | - |
| Dpoa569_RS03385 (Dpoa569_0000681) | ssb | 761668..762222 (-) | 555 | WP_042872689.1 | single-stranded DNA-binding protein | Machinery gene |
| Dpoa569_RS03390 (Dpoa569_0000682) | uvrA | 762467..765298 (+) | 2832 | WP_042872687.1 | excinuclease ABC subunit UvrA | - |
| Dpoa569_RS03395 (Dpoa569_0000684) | - | 765593..767203 (-) | 1611 | WP_042872686.1 | sensor domain-containing diguanylate cyclase | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 19652.70 Da Isoelectric Point: 5.2440
>NTDB_id=376092 Dpoa569_RS03385 WP_042872689.1 761668..762222(-) (ssb) [Dickeya poaceiphila strain NCPPB 569]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYTTEVVVDISGSMQMLGGRAGGGAPAGGGMGGNMGGGNAPQGGWGQPQQPQQANQFSGGGQSQ
SRPQQSAPMPGNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYTTEVVVDISGSMQMLGGRAGGGAPAGGGMGGNMGGGNAPQGGWGQPQQPQQANQFSGGGQSQ
SRPQQSAPMPGNEPPMDFDDDIPF
Nucleotide
Download Length: 555 bp
>NTDB_id=376092 Dpoa569_RS03385 WP_042872689.1 761668..762222(-) (ssb) [Dickeya poaceiphila strain NCPPB 569]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTATCGGGAATCTGGGGCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTTGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGCCAGTTGCGCACCCGCAAATGGCAGGACCAGAGCGGTCAGGATCGCTACACCACCGAAGTGGTGGTCGATATCTC
CGGTAGTATGCAGATGCTGGGTGGCCGCGCAGGCGGCGGTGCACCAGCCGGTGGCGGCATGGGCGGTAATATGGGTGGTG
GTAACGCGCCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGCGGCGGTCAGTCCCAG
TCCCGCCCGCAGCAAAGCGCGCCGATGCCAGGCAACGAACCGCCGATGGATTTTGACGACGATATTCCGTTTTAA
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTATCGGGAATCTGGGGCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTTGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGCCAGTTGCGCACCCGCAAATGGCAGGACCAGAGCGGTCAGGATCGCTACACCACCGAAGTGGTGGTCGATATCTC
CGGTAGTATGCAGATGCTGGGTGGCCGCGCAGGCGGCGGTGCACCAGCCGGTGGCGGCATGGGCGGTAATATGGGTGGTG
GTAACGCGCCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGCGGCGGTCAGTCCCAG
TCCCGCCCGCAGCAAAGCGCGCCGATGCCAGGCAACGAACCGCCGATGGATTTTGACGACGATATTCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.936 |
100 |
0.755 |
| ssb | Glaesserella parasuis strain SC1401 |
54.497 |
100 |
0.56 |
| ssb | Neisseria meningitidis MC58 |
45.699 |
100 |
0.462 |
| ssb | Neisseria gonorrhoeae MS11 |
45.355 |
99.457 |
0.451 |