Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FP568_RS20350 Genome accession   NZ_CP042219
Coordinates   4529225..4529746 (-) Length   173 a.a.
NCBI ID   WP_191240054.1    Uniprot ID   -
Organism   Pandoraea pnomenusa strain TF-18     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4524225..4534746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP568_RS20330 (FP568_20330) - 4524516..4526054 (-) 1539 WP_145864532.1 hypothetical protein -
  FP568_RS20335 (FP568_20335) - 4526094..4526264 (-) 171 WP_006400971.1 rubredoxin -
  FP568_RS20340 (FP568_20340) - 4526475..4527314 (+) 840 WP_023872296.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FP568_RS20345 (FP568_20345) - 4527371..4529140 (-) 1770 WP_145864533.1 O-antigen ligase family protein -
  FP568_RS20350 (FP568_20350) pilA 4529225..4529746 (-) 522 WP_191240054.1 pilin Machinery gene
  FP568_RS20355 (FP568_20355) - 4529995..4530723 (-) 729 WP_145864535.1 TerC family protein -
  FP568_RS20360 (FP568_20360) sucD 4530925..4531806 (-) 882 WP_023594267.1 succinate--CoA ligase subunit alpha -
  FP568_RS20365 (FP568_20365) sucC 4531888..4533054 (-) 1167 WP_023594266.1 ADP-forming succinate--CoA ligase subunit beta -
  FP568_RS20370 (FP568_20370) - 4533051..4533737 (-) 687 WP_023594265.1 DUF2889 domain-containing protein -
  FP568_RS20375 (FP568_20375) recX 4534057..4534602 (-) 546 WP_023594264.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 17628.23 Da        Isoelectric Point: 9.8858

>NTDB_id=376081 FP568_RS20350 WP_191240054.1 4529225..4529746(-) (pilA) [Pandoraea pnomenusa strain TF-18]
MRRFGHRTTGLAKSRGFTLIELMIVLAIIGVLVTAGVPYLQNYLVRARVVEGLGAAASAKALVSENAMHGAPFNSGWQAP
SATDNVNAVTIDSVSGNVTVAYTQRAGDGALVLVPTSAGADGKPMALTVGKAPEGQIVWTCYAQGREGAPGGATLPAKLA
PPECRGAATQRGA

Nucleotide


Download         Length: 522 bp        

>NTDB_id=376081 FP568_RS20350 WP_191240054.1 4529225..4529746(-) (pilA) [Pandoraea pnomenusa strain TF-18]
ATGCGTCGTTTCGGCCACCGGACCACCGGTCTCGCCAAATCCCGGGGATTCACCCTGATCGAGCTGATGATCGTGCTGGC
GATCATCGGCGTGTTGGTCACGGCAGGGGTTCCGTATCTGCAAAACTATCTGGTGCGTGCGCGTGTCGTCGAGGGACTGG
GCGCGGCCGCGTCGGCCAAGGCGCTCGTGAGCGAGAACGCCATGCACGGCGCCCCGTTCAATAGCGGTTGGCAGGCGCCG
AGTGCGACCGACAACGTGAATGCCGTGACCATCGACTCGGTGAGCGGCAACGTCACGGTGGCCTACACCCAGCGCGCGGG
CGACGGCGCCCTGGTGCTGGTGCCCACGAGCGCCGGTGCCGACGGCAAGCCCATGGCGCTGACGGTCGGCAAGGCGCCTG
AAGGCCAGATCGTATGGACGTGTTACGCACAAGGTCGCGAGGGCGCACCCGGCGGTGCCACGCTGCCCGCGAAGCTCGCA
CCTCCCGAGTGCCGTGGCGCGGCGACCCAGCGGGGCGCCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(45-165)

Prokaryotic N-terminal methylation motif (N_methyl)

(13-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

48

100

0.486
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.375

100

0.382
  pilA2 Legionella pneumophila str. Paris

39.873

91.329

0.364

Multiple sequence alignment