Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FPZ22_RS09925 Genome accession   NZ_CP042218
Coordinates   2156350..2157756 (-) Length   468 a.a.
NCBI ID   WP_144892596.1    Uniprot ID   A0A518N5G2
Organism   Luteimonas granuli strain Gr-4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2151350..2162756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPZ22_RS09900 (FPZ22_09900) pilA2 2152327..2152770 (-) 444 WP_144892587.1 pilin Machinery gene
  FPZ22_RS09905 (FPZ22_09905) - 2153226..2153888 (+) 663 WP_168198981.1 class I SAM-dependent methyltransferase -
  FPZ22_RS09910 (FPZ22_09910) - 2153885..2154616 (+) 732 WP_144892591.1 methyltransferase domain-containing protein -
  FPZ22_RS09915 (FPZ22_09915) - 2154778..2155833 (+) 1056 WP_246120688.1 XRE family transcriptional regulator -
  FPZ22_RS09920 (FPZ22_09920) - 2155843..2156349 (+) 507 WP_144892594.1 hypothetical protein -
  FPZ22_RS09925 (FPZ22_09925) pilR 2156350..2157756 (-) 1407 WP_144892596.1 sigma-54 dependent transcriptional regulator Regulator
  FPZ22_RS09930 (FPZ22_09930) - 2157842..2159421 (-) 1580 Protein_1968 ATP-binding protein -
  FPZ22_RS09935 (FPZ22_09935) sucC 2159523..2160689 (+) 1167 WP_144892598.1 ADP-forming succinate--CoA ligase subunit beta -
  FPZ22_RS09940 (FPZ22_09940) sucD 2160714..2161592 (+) 879 WP_144892600.1 succinate--CoA ligase subunit alpha -
  FPZ22_RS09945 (FPZ22_09945) - 2161716..2161982 (+) 267 WP_144892602.1 type II toxin-antitoxin system CcdA family antitoxin -
  FPZ22_RS09950 (FPZ22_09950) - 2161979..2162293 (+) 315 WP_144892603.1 CcdB family protein -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 49793.12 Da        Isoelectric Point: 6.7302

>NTDB_id=376065 FPZ22_RS09925 WP_144892596.1 2156350..2157756(-) (pilR) [Luteimonas granuli strain Gr-4]
MTEARSALIVDDEHDIRELLVLTLGRMGLRTATAASLAAAREMLGRSSFDLCLTDMRLPDGSGLELVSDISTRFPETPVA
MITAYGNVEAAVEALKAGAFDFVSKPVDINVLRGLVRQALELHSRRQAQPDGTGRLLGGSPAMVALRETIAKVSRSQAPV
HISGESGTGKELVARTIHAQGVRADGPFVPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQSADGGTLFLDEVAEL
PLAMQVKLLRAIQEKKVRPVGAPAEVDVDVRILSATHKDLGALVNLGSFRHDLYYRINVIELHVPALREREGDLPLLAEA
IFARLAQAMHRQAPQFGPGALTALAAYSFPGNVRELENILERAMALADDDTITAADLRLPGGSTIGGHGAAPGRVPALPG
AVALPASPAAIGPRDTASSALPSYIEEIERAAIQQALQENKYNKTRAAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=376065 FPZ22_RS09925 WP_144892596.1 2156350..2157756(-) (pilR) [Luteimonas granuli strain Gr-4]
ATGACCGAAGCCCGCAGCGCCCTCATCGTCGACGACGAGCACGACATCCGCGAGCTGCTCGTGCTGACCCTCGGACGCAT
GGGTCTGCGCACGGCCACCGCCGCCAGCCTGGCCGCGGCGCGGGAAATGCTCGGACGCAGCAGCTTCGACCTCTGCCTCA
CCGACATGCGCCTGCCAGACGGCTCCGGCCTGGAACTGGTGAGCGACATCTCCACCCGCTTCCCGGAAACGCCGGTGGCG
ATGATCACCGCCTACGGCAACGTCGAGGCCGCGGTGGAAGCCTTGAAGGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCAACGTGCTGCGCGGCCTGGTGCGCCAGGCGCTGGAGCTGCACTCCCGCCGACAGGCCCAGCCCGACGGAACCG
GACGCCTGCTCGGCGGTTCGCCGGCCATGGTCGCGCTGCGGGAGACCATCGCCAAGGTGTCGCGCAGCCAGGCCCCGGTG
CACATCAGCGGCGAGTCCGGCACCGGCAAGGAACTGGTCGCGCGGACCATCCACGCCCAGGGCGTGCGCGCCGACGGCCC
CTTCGTGCCGGTGAACTGCGGCGCCATCCCCACGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAGGAAGGGCAGCTTCA
CCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGAGCGCCGACGGCGGCACCCTGTTCCTGGACGAGGTGGCCGAGCTG
CCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGAAGGTGCGGCCGGTGGGCGCGCCGGCGGAGGTGGA
CGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTCGGCGCGCTGGTCAACCTGGGCAGCTTCCGCCACGACCTGT
ACTACCGCATCAACGTGATCGAGCTGCACGTGCCCGCCCTGCGCGAGCGCGAGGGCGACCTGCCCCTGCTGGCCGAAGCG
ATCTTCGCCCGCCTGGCGCAGGCCATGCACCGCCAGGCGCCGCAGTTCGGGCCCGGCGCCCTGACCGCGCTGGCGGCCTA
CTCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCATGGCGCTGGCGGACGACGACACCATCACCG
CCGCCGACCTGCGCCTGCCCGGCGGCAGCACGATCGGCGGCCACGGTGCCGCCCCGGGCCGCGTCCCGGCGCTGCCGGGC
GCCGTCGCGCTGCCGGCCTCGCCCGCCGCCATCGGCCCCCGCGACACCGCCTCCAGCGCCCTGCCCTCCTACATCGAGGA
GATCGAACGCGCGGCCATCCAGCAGGCGCTGCAGGAGAACAAGTACAACAAGACCCGCGCCGCGGCGGCGCTGGGCATCA
CGTTCCGGGCGCTGCGGTACAAGCTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A518N5G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.207

99.145

0.607
  pilR Acinetobacter baumannii strain A118

48.827

100

0.489

Multiple sequence alignment