Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | D5R83_RS07580 | Genome accession | NZ_CP042211 |
| Coordinates | 1555750..1555863 (-) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori strain B128 7.13 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1550750..1560863
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5R83_RS07560 (D5R83_07560) | - | 1551416..1552828 (-) | 1413 | WP_001861341.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| D5R83_RS07565 (D5R83_07565) | comB10 | 1552898..1554034 (-) | 1137 | WP_001045869.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| D5R83_RS07570 (D5R83_07570) | comB9 | 1554027..1555010 (-) | 984 | WP_001861340.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| D5R83_RS07575 (D5R83_07575) | comB8 | 1555010..1555753 (-) | 744 | WP_000660520.1 | virB8 family protein | Machinery gene |
| D5R83_RS07580 (D5R83_07580) | comB7 | 1555750..1555863 (-) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| D5R83_RS07585 (D5R83_07585) | comB6 | 1555879..1556934 (-) | 1056 | WP_000786677.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| D5R83_RS07590 (D5R83_07590) | - | 1556942..1557937 (-) | 996 | WP_000468428.1 | PDZ domain-containing protein | - |
| D5R83_RS07595 (D5R83_07595) | - | 1557937..1558239 (-) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| D5R83_RS07600 (D5R83_07600) | panD | 1558242..1558595 (-) | 354 | WP_000142236.1 | aspartate 1-decarboxylase | - |
| D5R83_RS07605 (D5R83_07605) | - | 1558585..1560810 (-) | 2226 | WP_001051506.1 | ATP-dependent Clp protease ATP-binding subunit | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=376008 D5R83_RS07580 WP_001217873.1 1555750..1555863(-) (comB7) [Helicobacter pylori strain B128 7.13]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=376008 D5R83_RS07580 WP_001217873.1 1555750..1555863(-) (comB7) [Helicobacter pylori strain B128 7.13]
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |