Detailed information NTG0376009

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D5R83_RS07585
• Genome accession: NZ_CP042211
• Coordinates: 1555879..1556934 (-)
• Length: 351 a.a.
• NCBI ID: WP_000786677.1
• Uniprot ID: D7FG37
• Organism: Helicobacter pylori strain B128 7.13
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1550879..1561934

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D5R83_RS07560 (D5R83_07560)	-	1551416..1552828 (-)	1413	WP_001861341.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D5R83_RS07565 (D5R83_07565)	comB10	1552898..1554034 (-)	1137	WP_001045869.1	DNA type IV secretion system protein ComB10	Machinery gene
D5R83_RS07570 (D5R83_07570)	comB9	1554027..1555010 (-)	984	WP_001861340.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D5R83_RS07575 (D5R83_07575)	comB8	1555010..1555753 (-)	744	WP_000660520.1	virB8 family protein	Machinery gene
D5R83_RS07580 (D5R83_07580)	comB7	1555750..1555863 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D5R83_RS07585 (D5R83_07585)	comB6	1555879..1556934 (-)	1056	WP_000786677.1	P-type conjugative transfer protein TrbL	Machinery gene
D5R83_RS07590 (D5R83_07590)	-	1556942..1557937 (-)	996	WP_000468428.1	PDZ domain-containing protein	-
D5R83_RS07595 (D5R83_07595)	-	1557937..1558239 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D5R83_RS07600 (D5R83_07600)	panD	1558242..1558595 (-)	354	WP_000142236.1	aspartate 1-decarboxylase	-
D5R83_RS07605 (D5R83_07605)	-	1558585..1560810 (-)	2226	WP_001051506.1	ATP-dependent Clp protease ATP-binding subunit	-
D5R83_RS07610 (D5R83_07610)	-	1560810..1561085 (-)	276	WP_000784899.1	ATP-dependent Clp protease adaptor ClpS	-
D5R83_RS07615 (D5R83_07615)	-	1561100..1561513 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39908.89 Da
• Isoelectric Point: 8.5786

>NTDB_id=376009 D5R83_RS07585 WP_000786677.1 1555879..1556934(-) (comB6) [Helicobacter pylori strain B128 7.13]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALWFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMNESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=376009 D5R83_RS07585 WP_000786677.1 1555879..1556934(-) (comB6) [Helicobacter pylori strain B128 7.13]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTTTTTGCTTACAGGAGCT
TGAAGGAACAGAATTTCTTCAGCGCCAGCGCACTAACAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAGAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAATGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACT
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

3D structure

• AlphaFold DB: D7FG37

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.575	100	0.986