Detailed information NTG0376006

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: D5R83_RS07570
• Genome accession: NZ_CP042211
• Coordinates: 1554027..1555010 (-)
• Length: 327 a.a.
• NCBI ID: WP_001861340.1
• Uniprot ID: D7FG34
• Organism: Helicobacter pylori strain B128 7.13
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1549027..1560010

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D5R83_RS07550 (D5R83_07550)	-	1549318..1550250 (-)	933	WP_001006014.1	GDP-L-fucose synthase	-
D5R83_RS07555 (D5R83_07555)	gmd	1550243..1551388 (-)	1146	WP_000659801.1	GDP-mannose 4,6-dehydratase	-
D5R83_RS07560 (D5R83_07560)	-	1551416..1552828 (-)	1413	WP_001861341.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D5R83_RS07565 (D5R83_07565)	comB10	1552898..1554034 (-)	1137	WP_001045869.1	DNA type IV secretion system protein ComB10	Machinery gene
D5R83_RS07570 (D5R83_07570)	comB9	1554027..1555010 (-)	984	WP_001861340.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D5R83_RS07575 (D5R83_07575)	comB8	1555010..1555753 (-)	744	WP_000660520.1	virB8 family protein	Machinery gene
D5R83_RS07580 (D5R83_07580)	comB7	1555750..1555863 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D5R83_RS07585 (D5R83_07585)	comB6	1555879..1556934 (-)	1056	WP_000786677.1	P-type conjugative transfer protein TrbL	Machinery gene
D5R83_RS07590 (D5R83_07590)	-	1556942..1557937 (-)	996	WP_000468428.1	PDZ domain-containing protein	-
D5R83_RS07595 (D5R83_07595)	-	1557937..1558239 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D5R83_RS07600 (D5R83_07600)	panD	1558242..1558595 (-)	354	WP_000142236.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37670.47 Da
• Isoelectric Point: 9.4540

>NTDB_id=376006 D5R83_RS07570 WP_001861340.1 1554027..1555010(-) (comB9) [Helicobacter pylori strain B128 7.13]
MRKFLYALMGFLLVFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENAFENAPTNNKPLKEEPLKAGKEEAKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLG
ICSKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRF
VKKGKDE

Nucleotide

• Length: 984 bp

>NTDB_id=376006 D5R83_RS07570 WP_001861340.1 1554027..1555010(-) (comB9) [Helicobacter pylori strain B128 7.13]
ATGCGGAAATTTTTATACGCTCTCATGGGCTTTTTATTGGTTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGACAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATGCCTTTGAAAATGCCCCCACAAACAACAAGCCCTTAAA
AGAAGAACCCTTAAAAGCAGGAAAAGAAGAAGCCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACTAACG
CCATGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGG
ATTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAAATACTAGGATTG
TGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTT
GTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-318)

3D structure

• AlphaFold DB: D7FG34

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.749	100	0.939