Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | D5R83_RS07565 | Genome accession | NZ_CP042211 |
| Coordinates | 1552898..1554034 (-) | Length | 378 a.a. |
| NCBI ID | WP_001045869.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain B128 7.13 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1547898..1559034
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5R83_RS07545 (D5R83_07545) | hypE | 1548013..1549011 (+) | 999 | WP_000378855.1 | hydrogenase expression/formation protein HypE | - |
| D5R83_RS07550 (D5R83_07550) | - | 1549318..1550250 (-) | 933 | WP_001006014.1 | GDP-L-fucose synthase | - |
| D5R83_RS07555 (D5R83_07555) | gmd | 1550243..1551388 (-) | 1146 | WP_000659801.1 | GDP-mannose 4,6-dehydratase | - |
| D5R83_RS07560 (D5R83_07560) | - | 1551416..1552828 (-) | 1413 | WP_001861341.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| D5R83_RS07565 (D5R83_07565) | comB10 | 1552898..1554034 (-) | 1137 | WP_001045869.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| D5R83_RS07570 (D5R83_07570) | comB9 | 1554027..1555010 (-) | 984 | WP_001861340.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| D5R83_RS07575 (D5R83_07575) | comB8 | 1555010..1555753 (-) | 744 | WP_000660520.1 | virB8 family protein | Machinery gene |
| D5R83_RS07580 (D5R83_07580) | comB7 | 1555750..1555863 (-) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| D5R83_RS07585 (D5R83_07585) | comB6 | 1555879..1556934 (-) | 1056 | WP_000786677.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| D5R83_RS07590 (D5R83_07590) | - | 1556942..1557937 (-) | 996 | WP_000468428.1 | PDZ domain-containing protein | - |
| D5R83_RS07595 (D5R83_07595) | - | 1557937..1558239 (-) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| D5R83_RS07600 (D5R83_07600) | panD | 1558242..1558595 (-) | 354 | WP_000142236.1 | aspartate 1-decarboxylase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42295.98 Da Isoelectric Point: 10.0478
>NTDB_id=376005 D5R83_RS07565 WP_001045869.1 1552898..1554034(-) (comB10) [Helicobacter pylori strain B128 7.13]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKSLQEQLKA
ALKALKSKEMNHSKEETFKSPPIDLKANTTPPKKDFSLKQWDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKSLQEQLKA
ALKALKSKEMNHSKEETFKSPPIDLKANTTPPKKDFSLKQWDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=376005 D5R83_RS07565 WP_001045869.1 1552898..1554034(-) (comB10) [Helicobacter pylori strain B128 7.13]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATTTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCAAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAATCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAAATCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATGGGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTTATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GAATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATTTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCAAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAATCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAAATCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATGGGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTTATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GAATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.032 |
100 |
0.96 |