Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | FP481_RS06050 | Genome accession | NZ_CP042157 |
| Coordinates | 1199847..1200350 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain B3-17D | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1195787..1223039 | 1199847..1200350 | within | 0 |
Gene organization within MGE regions
Location: 1195787..1223039
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FP481_RS06020 (FP481_06015) | - | 1195787..1196632 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| FP481_RS06025 (FP481_06020) | - | 1196786..1197667 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| FP481_RS06030 (FP481_06025) | - | 1197697..1197900 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| FP481_RS06035 (FP481_06030) | ychF | 1197912..1199009 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| FP481_RS06040 (FP481_06035) | - | 1199095..1199286 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| FP481_RS06045 (FP481_06040) | rpsF | 1199530..1199826 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| FP481_RS06050 (FP481_06045) | ssbA | 1199847..1200350 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| FP481_RS06055 (FP481_06050) | rpsR | 1200402..1200644 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| FP481_RS06060 (FP481_06055) | - | 1200883..1201783 (-) | 901 | Protein_1178 | Abi family protein | - |
| FP481_RS06065 (FP481_06060) | - | 1201785..1202999 (-) | 1215 | WP_031765313.1 | site-specific integrase | - |
| FP481_RS06070 (FP481_06065) | - | 1203263..1203988 (-) | 726 | WP_000668215.1 | helix-turn-helix domain-containing protein | - |
| FP481_RS06075 (FP481_06070) | - | 1204160..1204372 (+) | 213 | WP_001245562.1 | helix-turn-helix transcriptional regulator | - |
| FP481_RS06080 (FP481_06075) | - | 1204373..1204645 (+) | 273 | WP_001138300.1 | helix-turn-helix domain-containing protein | - |
| FP481_RS06085 (FP481_06080) | - | 1204657..1204803 (+) | 147 | WP_031795576.1 | hypothetical protein | - |
| FP481_RS06090 (FP481_06085) | tscA | 1204796..1205008 (+) | 213 | WP_001058498.1 | type II toxin-antitoxin system antitoxin TscA | - |
| FP481_RS06095 (FP481_06090) | - | 1205010..1205369 (+) | 360 | WP_001038250.1 | hypothetical protein | - |
| FP481_RS06100 (FP481_06095) | tscT | 1205370..1205687 (+) | 318 | WP_001103969.1 | type II toxin-antitoxin system toxin TscT | - |
| FP481_RS06105 (FP481_06100) | - | 1205752..1206621 (+) | 870 | WP_031765319.1 | primase alpha helix C-terminal domain-containing protein | - |
| FP481_RS06110 (FP481_06105) | - | 1206638..1208095 (+) | 1458 | WP_031765320.1 | virulence-associated E family protein | - |
| FP481_RS06115 (FP481_06110) | - | 1208396..1208758 (+) | 363 | WP_031765322.1 | hypothetical protein | - |
| FP481_RS06120 (FP481_06115) | - | 1208760..1209044 (+) | 285 | WP_000998179.1 | hypothetical protein | - |
| FP481_RS06125 (FP481_06120) | - | 1209041..1209682 (+) | 642 | WP_031765326.1 | pathogenicity island protein | - |
| FP481_RS06130 (FP481_06125) | - | 1210390..1210734 (+) | 345 | WP_001288441.1 | hypothetical protein | - |
| FP481_RS06135 (FP481_06130) | - | 1210769..1211347 (+) | 579 | WP_031769358.1 | hypothetical protein | - |
| FP481_RS14630 | - | 1211347..1211523 (+) | 177 | WP_001160678.1 | hypothetical protein | - |
| FP481_RS06140 (FP481_06135) | - | 1211576..1212103 (+) | 528 | WP_145373908.1 | spore coat protein | - |
| FP481_RS06145 (FP481_06140) | - | 1212106..1212447 (+) | 342 | WP_031769360.1 | hypothetical protein | - |
| FP481_RS06150 (FP481_06145) | - | 1212444..1213013 (+) | 570 | WP_031765334.1 | terminase small subunit | - |
| FP481_RS06155 (FP481_06150) | tst | 1213168..1213872 (-) | 705 | WP_001035599.1 | toxic shock syndrome toxin TSST-1 | - |
| FP481_RS14635 | - | 1214283..1214447 (+) | 165 | WP_153153625.1 | hypothetical protein | - |
| FP481_RS06160 (FP481_06155) | - | 1214522..1214725 (+) | 204 | Protein_1200 | exotoxin beta-grasp domain-containing protein | - |
| FP481_RS06165 (FP481_06160) | - | 1214803..1215360 (-) | 558 | WP_031765336.1 | DUF4888 domain-containing protein | - |
| FP481_RS06170 (FP481_06165) | - | 1215919..1216338 (+) | 420 | WP_000273396.1 | hypothetical protein | - |
| FP481_RS06175 (FP481_06170) | - | 1216352..1217521 (+) | 1170 | WP_001606776.1 | DUF6575 domain-containing protein | - |
| FP481_RS06180 (FP481_06175) | - | 1218091..1219029 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| FP481_RS14845 (FP481_06180) | - | 1219068..1219781 (-) | 714 | Protein_1205 | tyrosine-type recombinase/integrase | - |
| FP481_RS06190 (FP481_06185) | selX | 1219987..1220598 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| FP481_RS06195 (FP481_06190) | - | 1220967..1221335 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| FP481_RS06200 (FP481_06195) | - | 1221516..1222088 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| FP481_RS06205 (FP481_06200) | - | 1222225..1222488 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| FP481_RS06210 (FP481_06205) | - | 1222788..1223039 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=375768 FP481_RS06050 WP_000934799.1 1199847..1200350(+) (ssbA) [Staphylococcus aureus strain B3-17D]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=375768 FP481_RS06050 WP_000934799.1 1199847..1200350(+) (ssbA) [Staphylococcus aureus strain B3-17D]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |