Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | FP482_RS01980 | Genome accession | NZ_CP042153 |
| Coordinates | 441730..442233 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain B4-59C | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 437670..464921 | 441730..442233 | within | 0 |
Gene organization within MGE regions
Location: 437670..464921
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FP482_RS01950 (FP482_01950) | - | 437670..438515 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| FP482_RS01955 (FP482_01955) | - | 438669..439550 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| FP482_RS01960 (FP482_01960) | - | 439580..439783 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| FP482_RS01965 (FP482_01965) | ychF | 439795..440892 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| FP482_RS01970 (FP482_01970) | - | 440978..441169 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| FP482_RS01975 (FP482_01975) | rpsF | 441413..441709 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| FP482_RS01980 (FP482_01980) | ssbA | 441730..442233 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| FP482_RS01985 (FP482_01985) | rpsR | 442285..442527 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| FP482_RS01990 (FP482_01990) | - | 442766..443666 (-) | 901 | Protein_390 | Abi family protein | - |
| FP482_RS01995 (FP482_01995) | - | 443668..444882 (-) | 1215 | WP_031765313.1 | site-specific integrase | - |
| FP482_RS02000 (FP482_02000) | - | 445146..445871 (-) | 726 | WP_000668215.1 | helix-turn-helix domain-containing protein | - |
| FP482_RS02005 (FP482_02005) | - | 446043..446255 (+) | 213 | WP_001245562.1 | helix-turn-helix transcriptional regulator | - |
| FP482_RS02010 (FP482_02010) | - | 446256..446528 (+) | 273 | WP_001138300.1 | helix-turn-helix domain-containing protein | - |
| FP482_RS02015 (FP482_02015) | - | 446540..446686 (+) | 147 | WP_031795576.1 | hypothetical protein | - |
| FP482_RS02020 (FP482_02020) | tscA | 446679..446891 (+) | 213 | WP_001058498.1 | type II toxin-antitoxin system antitoxin TscA | - |
| FP482_RS02025 (FP482_02025) | - | 446893..447252 (+) | 360 | WP_001038250.1 | hypothetical protein | - |
| FP482_RS02030 (FP482_02030) | tscT | 447253..447570 (+) | 318 | WP_001103969.1 | type II toxin-antitoxin system toxin TscT | - |
| FP482_RS02035 (FP482_02035) | - | 447634..448503 (+) | 870 | WP_145411572.1 | primase alpha helix C-terminal domain-containing protein | - |
| FP482_RS02040 (FP482_02040) | - | 448520..449977 (+) | 1458 | WP_031765320.1 | virulence-associated E family protein | - |
| FP482_RS02045 (FP482_02045) | - | 450278..450640 (+) | 363 | WP_031765322.1 | hypothetical protein | - |
| FP482_RS02050 (FP482_02050) | - | 450642..450926 (+) | 285 | WP_000998179.1 | hypothetical protein | - |
| FP482_RS02055 (FP482_02055) | - | 450923..451564 (+) | 642 | WP_031765326.1 | pathogenicity island protein | - |
| FP482_RS02060 (FP482_02060) | - | 452272..452616 (+) | 345 | WP_001288441.1 | hypothetical protein | - |
| FP482_RS02065 (FP482_02065) | - | 452651..453229 (+) | 579 | WP_031769358.1 | hypothetical protein | - |
| FP482_RS14180 | - | 453229..453405 (+) | 177 | WP_001160678.1 | hypothetical protein | - |
| FP482_RS02070 (FP482_02070) | - | 453458..453985 (+) | 528 | WP_031765331.1 | spore coat protein | - |
| FP482_RS02075 (FP482_02075) | - | 453988..454329 (+) | 342 | WP_031769360.1 | hypothetical protein | - |
| FP482_RS02080 (FP482_02080) | - | 454326..454895 (+) | 570 | WP_031765334.1 | terminase small subunit | - |
| FP482_RS02085 (FP482_02085) | tst | 455050..455754 (-) | 705 | WP_001035599.1 | toxic shock syndrome toxin TSST-1 | - |
| FP482_RS14185 | - | 456165..456329 (+) | 165 | WP_153153625.1 | hypothetical protein | - |
| FP482_RS02090 (FP482_02090) | - | 456404..456607 (+) | 204 | Protein_412 | exotoxin beta-grasp domain-containing protein | - |
| FP482_RS02095 (FP482_02095) | - | 456685..457242 (-) | 558 | WP_031765336.1 | DUF4888 domain-containing protein | - |
| FP482_RS02100 (FP482_02100) | - | 457801..458220 (+) | 420 | WP_000273396.1 | hypothetical protein | - |
| FP482_RS02105 (FP482_02105) | - | 458234..459403 (+) | 1170 | WP_001606776.1 | DUF6575 domain-containing protein | - |
| FP482_RS02110 (FP482_02110) | - | 459973..460911 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| FP482_RS14420 (FP482_02115) | - | 460950..461663 (-) | 714 | Protein_417 | tyrosine-type recombinase/integrase | - |
| FP482_RS02120 (FP482_02120) | selX | 461869..462480 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| FP482_RS02125 (FP482_02125) | - | 462849..463217 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| FP482_RS02130 (FP482_02130) | - | 463398..463970 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| FP482_RS02135 (FP482_02135) | - | 464107..464370 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| FP482_RS02140 (FP482_02140) | - | 464670..464921 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=375721 FP482_RS01980 WP_000934799.1 441730..442233(+) (ssbA) [Staphylococcus aureus strain B4-59C]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=375721 FP482_RS01980 WP_000934799.1 441730..442233(+) (ssbA) [Staphylococcus aureus strain B4-59C]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |