Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | G9W35_RS02935 | Genome accession | NZ_CP049845 |
| Coordinates | 596703..597239 (-) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A370V115 |
| Organism | Escherichia coli strain UPEC-245U/190328 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 591703..602239
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9W35_RS02915 (G9W35_02885) | soxR | 593431..593895 (-) | 465 | WP_000412428.1 | redox-sensitive transcriptional activator SoxR | - |
| G9W35_RS02920 (G9W35_02890) | soxS | 593981..594304 (+) | 324 | WP_000019358.1 | superoxide response transcriptional regulator SoxS | - |
| G9W35_RS02925 (G9W35_02895) | pdeC | 594307..595893 (-) | 1587 | WP_044687099.1 | c-di-GMP phosphodiesterase PdeC | - |
| G9W35_RS02930 (G9W35_02900) | yjcB | 596323..596604 (+) | 282 | WP_001295689.1 | YjcB family protein | - |
| G9W35_RS02935 (G9W35_02905) | ssb | 596703..597239 (-) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| G9W35_RS02940 (G9W35_02910) | uvrA | 597493..600315 (+) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | Machinery gene |
| G9W35_RS02945 (G9W35_02915) | yjbR | 600350..600706 (-) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| G9W35_RS02950 (G9W35_02920) | yjbQ | 600710..601126 (-) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| G9W35_RS02955 (G9W35_02925) | aphA | 601237..601950 (-) | 714 | WP_001307512.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=375407 G9W35_RS02935 WP_000168305.1 596703..597239(-) (ssb) [Escherichia coli strain UPEC-245U/190328]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=375407 G9W35_RS02935 WP_000168305.1 596703..597239(-) (ssb) [Escherichia coli strain UPEC-245U/190328]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |