Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPKB_RS08015 | Genome accession | NC_017354 |
| Coordinates | 402783..403793 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664494.1 | Uniprot ID | - |
| Organism | Helicobacter pylori 52 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 397783..408793
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPKB_RS01970 (HPKB_0384) | - | 397869..398243 (-) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
| HPKB_RS01975 (HPKB_0385) | - | 398534..399136 (+) | 603 | WP_000291634.1 | outer membrane protein | - |
| HPKB_RS01985 (HPKB_0387) | - | 399268..399675 (-) | 408 | WP_000906092.1 | hypothetical protein | - |
| HPKB_RS01990 (HPKB_0388) | - | 399678..399920 (-) | 243 | WP_000944392.1 | PP0621 family protein | - |
| HPKB_RS01995 (HPKB_0389) | rsmG | 399914..400450 (-) | 537 | WP_001068830.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPKB_RS02000 (HPKB_0390) | queA | 400447..401484 (-) | 1038 | WP_000657317.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPKB_RS02005 (HPKB_0391) | tatC | 401488..402246 (-) | 759 | WP_000461175.1 | twin-arginine translocase subunit TatC | - |
| HPKB_RS02010 (HPKB_0392) | tatB | 402239..402715 (-) | 477 | WP_000467620.1 | Sec-independent protein translocase protein TatB | - |
| HPKB_RS08015 (HPKB_0393) | ruvB | 402783..403793 (-) | 1011 | WP_000664494.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPKB_RS08020 (HPKB_0394) | panB | 403794..404606 (-) | 813 | WP_000062717.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPKB_RS02025 (HPKB_0395) | - | 404755..405477 (+) | 723 | WP_000523340.1 | hypothetical protein | - |
| HPKB_RS02030 (HPKB_0396) | - | 405467..406321 (+) | 855 | WP_042349310.1 | outer membrane beta-barrel protein | - |
| HPKB_RS02035 (HPKB_0397) | - | 406330..407268 (+) | 939 | WP_000911215.1 | outer membrane beta-barrel protein | - |
| HPKB_RS02040 (HPKB_0398) | - | 407279..408601 (+) | 1323 | WP_000423093.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37264.20 Da Isoelectric Point: 5.7655
>NTDB_id=37537 HPKB_RS08015 WP_000664494.1 402783..403793(-) (ruvB) [Helicobacter pylori 52]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIITKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIITKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=37537 HPKB_RS08015 WP_000664494.1 402783..403793(-) (ruvB) [Helicobacter pylori 52]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGACTGG
ATATTATCATAGGCTCAGGTCCGGCCGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGTGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCACAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGACTGG
ATATTATCATAGGCTCAGGTCCGGCCGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGTGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCACAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.87 |
96.131 |
0.518 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |