Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FP508_RS08485 | Genome accession | NZ_CP041998 |
| Coordinates | 1679052..1679543 (-) | Length | 163 a.a. |
| NCBI ID | WP_000609586.1 | Uniprot ID | A0AAD2WUV1 |
| Organism | Streptococcus agalactiae strain GBS7 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1674052..1684543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FP508_RS08470 (FP508_08790) | - | 1676958..1677629 (-) | 672 | WP_000174844.1 | DUF1129 domain-containing protein | - |
| FP508_RS08475 (FP508_08795) | - | 1677654..1678598 (-) | 945 | WP_000812124.1 | magnesium transporter CorA family protein | - |
| FP508_RS08480 (FP508_08800) | rpsR | 1678768..1679007 (-) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| FP508_RS08485 (FP508_08805) | ssb | 1679052..1679543 (-) | 492 | WP_000609586.1 | single-stranded DNA-binding protein | Machinery gene |
| FP508_RS08490 (FP508_08810) | rpsF | 1679555..1679842 (-) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| FP508_RS08495 (FP508_08815) | mutY | 1680905..1682059 (+) | 1155 | WP_016480119.1 | A/G-specific adenine glycosylase | - |
| FP508_RS08500 (FP508_08820) | - | 1682236..1682829 (+) | 594 | WP_000402392.1 | helix-turn-helix domain-containing protein | - |
| FP508_RS08505 (FP508_08825) | trxA | 1682875..1683207 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| FP508_RS08510 (FP508_08830) | - | 1683270..1683770 (-) | 501 | WP_000446806.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18155.77 Da Isoelectric Point: 4.9119
>NTDB_id=375328 FP508_RS08485 WP_000609586.1 1679052..1679543(-) (ssb) [Streptococcus agalactiae strain GBS7]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=375328 FP508_RS08485 WP_000609586.1 1679052..1679543(-) (ssb) [Streptococcus agalactiae strain GBS7]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACGCCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACGCCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.638 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.286 |
100 |
0.626 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |