Detailed information NTG0037524

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: HPKB_RS04355
• Genome accession: NC_017354
• Coordinates: 900967..901518 (-)
• Length: 183 a.a.
• NCBI ID: WP_000635171.1
• Uniprot ID: -
• Organism: Helicobacter pylori 52
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 895967..906518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPKB_RS04330 (HPKB_0847)	-	896008..897144 (+)	1137	WP_000462008.1	potassium channel family protein	-
HPKB_RS04335 (HPKB_0848)	-	897160..897540 (-)	381	WP_001108966.1	hypothetical protein	-
HPKB_RS04340 (HPKB_0849)	-	897555..900371 (-)	2817	WP_409229848.1	DUF3519 domain-containing protein	-
HPKB_RS04350 (HPKB_0850)	-	900371..900916 (-)	546	Protein_847	DUF3519 domain-containing protein	-
HPKB_RS04355 (HPKB_0851)	ruvA	900967..901518 (-)	552	WP_000635171.1	Holliday junction branch migration protein RuvA	Machinery gene
HPKB_RS04360 (HPKB_0852)	-	901543..903387 (-)	1845	WP_000051022.1	FapA family protein	-
HPKB_RS04365 (HPKB_0853)	murJ	903480..904940 (+)	1461	WP_000913493.1	murein biosynthesis integral membrane protein MurJ	-
HPKB_RS04370 (HPKB_0854)	cysS	904941..906338 (+)	1398	WP_000471327.1	cysteine--tRNA ligase	-

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 20145.84 Da
• Isoelectric Point: 8.0209

>NTDB_id=37524 HPKB_RS04355 WP_000635171.1 900967..901518(-) (ruvA) [Helicobacter pylori 52]
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRASALLQMGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPACNEVFLALESLGFKSTEINKV
LKTLKPNLSIEAAIKEALQQLRS

Nucleotide

• Length: 552 bp

>NTDB_id=37524 HPKB_RS04355 WP_000635171.1 900967..901518(-) (ruvA) [Helicobacter pylori 52]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGCGCTTCTGCTTTGCTCCAAATGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATCAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTGAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAGCATTATCGCCACCAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATTGGCAAAAAGCTCGCTGATAAGATCATGGTGGATCTCATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGTGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCACCGAAATCAATAAAGTG
TTAAAAACCCTAAAACCCAATCTCAGCATAGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-127)

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (141-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Helicobacter pylori 26695	94.536	100	0.945
ruvA	Streptococcus pneumoniae TIGR4	33.846	100	0.361
ruvA	Streptococcus pneumoniae R6	33.846	100	0.361
ruvA	Streptococcus pneumoniae D39	33.846	100	0.361